hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj05126/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4140  ( 998 res)   mfj05126

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 36.0    5.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1      66   125 ..     1    39 []    36.0  5.2e-06

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 66 to 125: score 36.0, E = 5.2e-06
                   *->yC.vCgk.........g.llqCd.kgCdrwyHv.Clgpple......
                      +C +C++ +++++  +g ++ C+++gC++++Hv+C++++++  ++++
   mKIAA4140    66    TCyICDEqgreskaatGaCMTCNkHGCRQAFHVtCAQFAGLlceeeg 112  

                   .epdg.wyCprCk<-*
                   +  d   yC  Ck   
   mKIAA4140   113 nGADNvQYCGYCK    125  

//