hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj21022/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4139 ( 1059 res) mfj21022 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- E1-E2_ATPase E1-E2 ATPase 390.9 1.3e-113 1 Cation_ATPase_C Cation transporting ATPase, C-terminu 249.4 5.1e-71 1 Cation_ATPase_N Cation transporter/ATPase, N-terminus 137.5 2.4e-37 1 Hydrolase haloacid dehalogenase-like hydrolase 64.5 2.3e-15 1 Hydrolase_3 haloacid dehalogenase-like hydrolase -95.4 0.92 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Cation_ATPase_N 1/1 69 152 .. 1 87 [] 137.5 2.4e-37 E1-E2_ATPase 1/1 171 402 .. 1 245 [] 390.9 1.3e-113 Hydrolase 1/1 406 774 .. 1 183 [] 64.5 2.3e-15 Hydrolase_3 1/1 558 798 .. 1 271 [] -95.4 0.92 Cation_ATPase_C 1/1 870 1048 .. 1 199 [] 249.4 5.1e-71 Alignments of top-scoring domains: Cation_ATPase_N: domain 1 of 1, from 69 to 152: score 137.5, E = 2.4e-37 *->eelkkevdldahkltvEevleklktdpeeGLsseeaaeRlkkyGpNe +elkkev++d+hkl+++e+ +k++td+++GL+++ aae l+++GpN+ mKIAA4139 69 DELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNA 115 LppekktslwlkfLeQFkdplvllLlaAAiiSALdfvlgg<-* L+p+++t++w+kf++Q+++++++lL+++Ai++ f+++g mKIAA4139 116 LTPPPTTPEWVKFCRQLFGGFSMLLWIGAILC---FLAYG 152 E1-E2_ATPase: domain 1 of 1, from 171 to 402: score 390.9, E = 1.3e-113 *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdGgkeeei v+ ++v++++++++yqe++++k++e++k++vp++A V+R+G + +i mKIAA4139 171 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNG-EKMSI 216 paeeLvpGDiVevkpGdrVPADgrvvegestLkVDESaLTGESlPVeKhs +ae++v+GD+Vevk Gdr+PAD+r++++++ +kVD+S+LTGES+P+++ s mKIAA4139 217 NAEDVVVGDLVEVKGGDRIPADLRIISANG-CKVDNSSLTGESEPQTR-S 264 dvvtpdnplergnmVfaGTlvvsGsltgvVtatGddTflgkIakLVeeAq +++t++nple++n++f++T++v+G+++g+V+ tGd+T++g+Ia+L ++ + mKIAA4139 265 PDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLE 314 ssktPlQrlldkfgkiltpvililavlvfiiwllrnfnaafggswlegll +++tP+ ++++f + +t v+++l+v +fi+ l++ ++wle mKIAA4139 315 GGQTPIAEEIEHFIHLITGVAVFLGVSFFILSLIL------EYTWLE--- 355 yalifavallVaAcPegLplvvtvalalGtgrmAkkgaLVKglpAvEt<- a+if+++++Va++PegL ++vtv+l+l+++rmA+k++LVK+l+AvEt mKIAA4139 356 -AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVET 402 * mKIAA4139 - - Hydrolase: domain 1 of 1, from 406 to 774: score 64.5, E = 2.3e-15 *->ikavvFDkDGTLtdgk............................... + +++ Dk+GTLt+ + + + +++ ++ ++++++++ + ++++ mKIAA4139 406 TSTICSDKTGTLTQNRmtvahmwfdnqiheadttenqsgvsfdktsa 452 ............eppiaeaiveaaaelgl.lpleevekllgrgl.g.... + ++ + ++ +a +e ++ l ++ ++ e++l++ +++ ++ mKIAA4139 453 twfalsriaglcNRAVFQANQENLPILKRaVAGDASESALLKCIeVccgs 502 erilleggltaell.................................... + + e + ++++++ +++++ + +++++ +++++ ++ +++ + mKIAA4139 503 VMEMREKYSKIVEIpfnstnkyqlsihknpnasepkhllvmkgaperild 552 .................................................. + ++ ++++ + +++ ++ + + ++ +++ + + +++ + mKIAA4139 553 rcssillhgkeqpldeelkdafqnaylelgglgervlgfchlllpdeqfp 602 ...............d.evlglial.dklypgarealkaLkerGikvail ++ ++++ + + ++ +++gli d+++ +++a+ +++++Gikv+++ mKIAA4139 603 egfqfdtddvnfpvdNlCFVGLISMiDPPRAAVPDAVGKCRSAGIKVIMV 652 Tggdr.naeallealgla.lfdvivdsddvggvgpivvgKPkpeifllal Tg+++ +a+a +a+ +++i + ++ + ++ mKIAA4139 653 TGDHPiTAKA------IAkGVGIISEGNETV---------------EDIA 681 erlgvkpeevg....................................... rl++++ +v++++ + ++++ ++ ++++ ++ + +++ ++++ mKIAA4139 682 ARLNIPVNQVNprdakacvvhgsdlkdmtseelddilryhteivfartsp 731 .............pe.vlmvGDgvnDapalaaAGvgvamgngg<-* +++ ++ ++++ v++ GDgvnD pal++A++gvamg g mKIAA4139 732 qqkliivegcqrqGAiVAVTGDGVNDSPALKKADIGVAMGIVG 774 Hydrolase_3: domain 1 of 1, from 558 to 798: score -95.4, E = 0.92 *->iasDlDGTLLnsdkk.isektkeAikklqekGikvviATGRpyrgal LL+ + ++++e+ k+A++ y ++ mKIAA4139 558 --------LLHGKEQpLDEELKDAFQN--------------AYLELG 582 pvle.eLgldkmqlpvIcgYyNGAlityddengkilyknpid........ + e+ Lg+ + + ++++g + + + + ++ mKIAA4139 583 GLGErVLGFC---HLLLP--------DEQFPEGFQFDTDDVNfpvdnlcf 621 ..........kedvkeiieylkelnlsillytddgiyvlndkevsekier + + ++++++v + + ++++ ++ ++++t+d+ ++ ++ k + mKIAA4139 622 vglismidppRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA---IAKGVG 668 eenkvksfvlviddfeelededin....Killfiviv.dpedldelleke + ++v++i ++++ + +n+++ K +v+ + d +e mKIAA4139 669 IISEGNETVEDIAARLNIPVNQVNprdaKAC----VVhGSDLKDMT-SEE 713 lkelfgklievtitssgpgylEImpkgvsKgtalkaLakhlgidleeviA l++ + e+ + +++p I+ g++ a+ a+ mKIAA4139 714 LDDILRYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVT------------ 751 FGDgeNDieMLelaGlgVAMg.NAspevKaaAdyEvtgsNneedGVAkal GDg ND + L+ a++gVAMg +s+ K+aAd+ + + n + mKIAA4139 752 -GDGVNDSPALKKADIGVAMGiVGSDVSKQAADM-ILLDDNF-ASIVTGV 798 <-* mKIAA4139 - - Cation_ATPase_C: domain 1 of 1, from 870 to 1048: score 249.4, E = 5.1e-71 *->RpPRnpkkDeliftgllffrylviGvivavatlaaFvwwfygggenG R+PRnpk D+l++++l++++y +iG+i+a+++ F+++f++ +enG mKIAA4139 870 RQPRNPKTDKLVNERLISMAYGQIGMIQALGG---FFTYFVILAENG 913 edfgPhllygqlshwescgandltdsfkgqewCeifrkglearaqTmaFt f+P l+g++++w++ +nd++ds+ gq+w++++rk e++++T++F+ mKIAA4139 914 --FLPFHLLGIRETWDDRWVNDVEDSY-GQQWTYEQRKIVEFTCHTAFFV 960 vlVviqmfNAWEalncrsefFmhpldrnSlfqmgpgLfrNkwLllAvvls ++Vv+q+++ +++c+++ rnS+fq+g ++Nk+L+++++ + mKIAA4139 961 SIVVVQWAD---LVICKTR-------RNSVFQQG---MKNKILIFGLFEE 997 lalqllivYvPglqtiFgthpllslqeWlvvigfsflvfildElrKfikR +al++++ Y+Pg+ +++ +++l++++W+++++ s+l+f++dE+rK+i+R mKIAA4139 998 TALAAFLSYCPGMGAALR-MYPLKPTWWFCAFPYSLLIFVYDEVRKLIIR 1046 rr<-* rr mKIAA4139 1047 RR 1048 //