hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg17504/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4137 ( 832 res) mbg17504 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sel1 Sel1 repeat 263.5 2.8e-75 12 fn2 Fibronectin type II domain 89.8 5.5e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- fn2 1/1 165 206 .. 1 42 [] 89.8 5.5e-23 Sel1 1/12 221 256 .. 1 58 [] 10.5 5.2 Sel1 2/12 257 292 .. 1 58 [] 9.9 6.2 Sel1 3/12 293 328 .. 1 58 [] 22.2 0.012 Sel1 4/12 329 364 .. 1 58 [] 11.4 4 Sel1 5/12 411 447 .. 1 58 [] 39.7 6.7e-08 Sel1 6/12 448 484 .. 1 58 [] 37.6 2.9e-07 Sel1 7/12 485 520 .. 1 58 [] 40.9 2.9e-08 Sel1 8/12 521 556 .. 1 58 [] 45.3 1.4e-09 Sel1 9/12 557 592 .. 1 58 [] 16.2 0.78 Sel1 10/12 625 664 .. 1 58 [] 0.8 91 Sel1 11/12 665 700 .. 1 58 [] 27.8 0.00025 Sel1 12/12 702 737 .. 1 58 [] 38.7 1.3e-07 Alignments of top-scoring domains: fn2: domain 1 of 1, from 165 to 206: score 89.8, E = 5.5e-23 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* C+FPF++ k+Y++CTs+GR dgrlWC+TT++Y +D kwGFC mKIAA4137 165 CHFPFLFLDKEYDECTSDGREDGRLWCATTYDYKTDEKWGFC 206 Sel1: domain 1 of 12, from 221 to 256: score 10.5, E = 5.2 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA a+ y+ G+ ++ nG +k +++ A mKIAA4137 221 AeMIYQAGM----KIL---NGS---------NRKS-----QKRE--A 244 lkwyekAAeqGn<-* +++++kAA +++ mKIAA4137 245 YRYLQKAAGMNH 256 Sel1: domain 2 of 12, from 257 to 292: score 9.9, E = 6.2 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA +A+ ++ y++l+G++ ++ +++ A mKIAA4137 257 TkALERVS-------YALLFGDY--------LTQ------NIQA--A 280 lkwyekAAeqGn<-* + +ek e G+ mKIAA4137 281 KEMFEKLTEEGS 292 Sel1: domain 3 of 12, from 293 to 328: score 22.2, E = 0.012 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA +++q LG ly+ Gl G v +k A mKIAA4137 293 PkGQTGLG-------FLYASGL------G--VNS------SQAK--A 316 lkwyekAAeqGn<-* l +y+ A Gn mKIAA4137 317 LVYYTFGALGGN 328 Sel1: domain 4 of 12, from 329 to 364: score 11.4, E = 4 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA A + LG y y+ G+ G v + e A mKIAA4137 329 LiAHMILG-------YRYWAGI------G--VLQ------SCES--A 352 lkwyekAAeqGn<-* l +y++ A++ mKIAA4137 353 LTHYRLVANHVA 364 Sel1: domain 5 of 12, from 411 to 447: score 39.7, E = 6.7e-08 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA ++Aq LG +l+l+G G v++ ++++ A mKIAA4137 411 VqAQVGLG-------QLHLHGGR-----G--VEQ------NHQR--A 435 lkwyekAAeqGn<-* + ++ +AA++Gn mKIAA4137 436 FDYFNLAANAGN 447 Sel1: domain 6 of 12, from 448 to 484: score 37.6, E = 2.9e-07 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA ++A+ LG +y +G + vp+ e A mKIAA4137 448 ShAMAFLG-------KMYSEGSD-----I--VPQ------SNET--A 472 lkwyekAAeqGn<-* l++++kAA++Gn mKIAA4137 473 LHYFKKAADMGN 484 Sel1: domain 7 of 12, from 485 to 520: score 40.9, E = 2.9e-08 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA + +q LG ++yl+G+ G v +y++ A mKIAA4137 485 PvGQSGLG-------MAYLYGR------G--VQV------NYDL--A 508 lkwyekAAeqGn<-* lk+++kAAeqG mKIAA4137 509 LKYFQKAAEQGW 520 Sel1: domain 8 of 12, from 521 to 556: score 45.3, E = 1.4e-09 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA +++q++LG +y+nG+ G v++ Dy++ A mKIAA4137 521 VdGQLQLG-------SMYYNGI------G--VKR------DYKQ--A 544 lkwyekAAeqGn<-* lk++ +A + G+ mKIAA4137 545 LKYFNLASQGGH 556 Sel1: domain 9 of 12, from 557 to 592: score 16.2, E = 0.78 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA A ynL+ ++++ G G v + A mKIAA4137 557 IlAFYNLA-------QMHASGT------G--VMR------SCHT--A 580 lkwyekAAeqGn<-* +++++ +e+G mKIAA4137 581 VELFKNVCERGR 592 Sel1: domain 10 of 12, from 625 to 664: score 0.8, E = 91 *->a.AqynLGrm.lewlyylylnGlggkgheGGvvpkdeivprDyekve Aq n +++ ++ ++ G+ + y + mKIAA4137 625 EvAQSNAAFIlDQ--REATIVGE---------NET-------YPR-- 651 AlkwyekAAeqGn<-* Al ++ +AA qG+ mKIAA4137 652 ALLHWNRAASQGY 664 Sel1: domain 11 of 12, from 665 to 700: score 27.8, E = 0.00025 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA A +LG ++++G G + Dye A mKIAA4137 665 TvARIKLG-------DYHFYGF------G--TDV------DYET--A 688 lkwyekAAeqGn<-* + +y++A eq + mKIAA4137 689 FIHYRLASEQQH 700 Sel1: domain 12 of 12, from 702 to 737: score 38.7, E = 1.3e-07 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA a+A++nLG y++++Gl G +++ D+ + A mKIAA4137 702 AqAMFNLG-------YMHEKGL------G--IKQ------DIHL--A 725 lkwyekAAeqGn<-* ++y +AAe+ mKIAA4137 726 KRFYDMAAEASP 737 //