hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mbg/mbg09982/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4136 ( 1138 res) mbg09982 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ae ae: anion exchange protein 1522.7 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ae 1/1 138 1090 .. 1 987 [] 1522.7 0 Alignments of top-scoring domains: ae: domain 1 of 1, from 138 to 1090: score 1522.7, E = 0 *->fvelneLlldsrnQEpeWrETARWikfEEdveeggerWGkPHVatLs f+el+e ++ + eWrETARW+kfEEdve ggerW+kP VatLs mKIAA4136 138 FTELDEICWR-EGEDAEWRETARWLKFEEDVEDGGERWSKPYVATLS 183 fhSLlELRrciakGavLLDLaatsLpgvankvvDqliysgqirpedRdev +hSL+ELR+ci +G+vLLD a+++ +a +v+Dq++ sgq+ + R v mKIAA4136 184 LHSLFELRSCILNGTVLLDMHANTIEEIADMVLDQQVSSGQLNEDVRHRV 233 lraLLlKHsHpseakklgaGGekGGflsravsqssiGktlshhhdaseie +aL + H H++ k ++ ++s ++iGk s + ++ mKIAA4136 234 HEALMKQHHHQNQKKLANR-------IPIVRSFADIGKKQSE---PNSMD 273 pkpenPvisgagaPllphdrltemqlls...................... ++ + v+s aP+ +++ ++++s+ + +++ ++++++++++ + + mKIAA4136 274 KNAGQ-VVSPQSAPACAENKNDVSRENStvdfskglggqqkghtspcgmk 322 ..vpkdissrPeksklklkllkKlPedaEAtlVLVGevdFLekPalAFVR ++ k+ ++ + +l+++kK+P++aEA++ LVGe +FL++ ++AFVR mKIAA4136 323 qrLDKGPPHQ-QEREVDLHFMKKIPPGAEASNILVGELEFLDRTVVAFVR 371 LkeAveLeavlEVPVPvRFlFvLLGPsgpgvdYhEiGRAiATLMsDrvFh L+ Av+L ++ EVP+P RFlF+LLGP g+g++YhEiGR+iATLM+D+vFh mKIAA4136 372 LSPAVLLQGLAEVPIPSRFLFILLGPLGKGQQYHEIGRSIATLMTDEVFH 421 daAYlAddRddLLagIdeFLDcsiVLPPtEvdseirLepliplQrellRk d+AY+A+dR dL +gIdeFLD+++VLPP+E+d+ ir+ep++ ++++++Rk mKIAA4136 422 DVAYKAKDRNDLVSGIDEFLDQVTVLPPGEWDPSIRIEPPKNVPSQEKRK 471 RyeqpstvrgpenvtvgggleeakekaLedggsegphgDDdpLqRTGrlF +++ p ++ + g +e+ +g+s gp +LqRTGr+F mKIAA4136 472 -----IPAV-PNGTAAHGEAEP------HGGHS-GP-----ELQRTGRIF 503 GGLIrDIkRRYPhYlSDftDALnpQcLAAViFIYFAALSPAITFGGLLGE GGLI+DIkR++P++ SDf+DA+++QcLA+ +F Y A +SP ITFGGLLGE mKIAA4136 504 GGLILDIKRKAPFFWSDFRDAFSLQCLASFLFLYCACMSPVITFGGLLGE 553 KTenmmGVsElllSTAVqGviFaLlaAQPLLVvGFSGPLLVFEeafFsFC +Te+++ + E+l++ + G+ ++L+++QPL+++G++GP+LVFE ++F+FC mKIAA4136 554 ATEGRISAIESLFGASMTGIAYSLFGGQPLTILGSTGPVLVFEKILFKFC 603 ksngLEYlvGRvWiGlWlvllvlllVAtEGSfLVryiSRFTQEIFSfLIS k gL Yl+ R+ iGlW++ l+ +lVAt++S LV yi+RFT+E F++LI mKIAA4136 604 KEYGLSYLSLRASIGLWTATLCIILVATDASSLVCYITRFTEEAFASLIC 653 LIFIYETFsKLiKIfqehPii..syLqqfYetlfsCscvppkpskpsvsn IFIYE+ KL + + +Pi+ +++L + sC c++p +ps n mKIAA4136 654 IIFIYEALEKLFELSETYPINmhNDLELLTQY--SCNCMEP--HSPS--N 697 dttlArevlkstsltdayndttiDytallekdcskiggslggnkcra... d tl +s d i + l + +c+++ g+ +g c +++ mKIAA4136 698 D-TLKEWRESNLSASD------IIWGNLTVSECRSLHGEYVGRACGHghp 740 .lPNtALLSLvLmlGTFflAmfLRKFKNSryfPGkvRRlIGDFGVpISIl +P+ + S +L++ T +++ +L++FK+SryfP+kvR +++DF+V + Il mKIAA4136 741 yVPDVLFWSVILFFSTVTMSATLKQFKTSRYFPTKVRSIVSDFAVFLTIL 790 iMvlVDifIeDtyTQKLsVPsglkVTnpnaRGWFIpPLGentpFPwWmmv Mvl+D+ I+ +KL VPs +k+T + RGWF+ PLG n PwW+ mKIAA4136 791 CMVLIDYAIG-IPSPKLQVPSVFKPTRDD-RGWFVTPLGPN---PWWTII 835 AaalPALLVfILIFlEtQITTLIVSkkERKLvKGSGFHLDLLlvvamggi Aa++PALL +ILIF+++QIT++I+++kE+KL+KG+G+HLDLL+v++m g+ mKIAA4136 836 AAIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAVMLGV 885 aaLfGLPWLsAATVrSvTHaNALTVmskasaPGekaqIqeVrEQRvtGlL ++ +GLPW +AATV+S+TH+N+L+ +s++saPGe++++++ rEQRvtGl+ mKIAA4136 886 CSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLM 935 VavLvGLSiLmepILkrIPLaVLFGIFLYMGVTSLsGIQLfDRllLLlmP +++L G S++m+ ILk+IP++VL+G+FLYMG +SL GIQLfDR++L mP mKIAA4136 936 IFILMGSSVFMTSILKFIPMPVLYGVFLYMGASSLKGIQLFDRIKLFWMP 985 pKYhPdvpYvrrVktwRmHLFTliQilCLALLWvVKStkaASLafPfvLi +K++Pd++Y+r+V+++++HLFT iQ+ CL+LLW++K++ A++ fP + + mKIAA4136 986 AKHQPDFIYLRHVPLRKVHLFTVIQMSCLGLLWIIKVS-RAAIVFPMMVL 1034 LtVPLRrlllprlFterELkcLDDviPekdkkKkeDAkvkfdEekvelds ++V +R+l++ lFt rEL+ LDD +Pe kkK eDA++ + mKIAA4136 1035 ALVFVRKLMD-FLFTKRELSWLDDLMPESKKKKLEDAEKEEEQS----ML 1079 dGeDeyntyaeKveaEvpmP<-* eDe + v++P mKIAA4136 1080 AMEDEGT---------VQLP 1090 //