hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09982/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4136  ( 1138 res)   mbg09982

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
HCO3_cotransp HCO3- transporter family                 1230.5          0   1
Band_3_cyto   Band 3 cytoplasmic domain                 494.1     1e-144   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Band_3_cyto     1/1     166   455 ..     1   278 []   494.1   1e-144
HCO3_cotransp   1/1     495  1009 ..     1   519 []  1230.5        0

Alignments of top-scoring domains:
Band_3_cyto: domain 1 of 1, from 166 to 455: score 494.1, E = 1e-144
                   *->dveeggeRWGKPHVAtLSfhSLlELRrciakGtvLLDLqatsLpgvA
                      dve+ggeRW+KP+VAtLS+hSL+ELR+ci++GtvLLD++a++++++A
   mKIAA4136   166    DVEDGGERWSKPYVATLSLHSLFELRSCILNGTVLLDMHANTIEEIA 212  

                   hlVldqlivsgqlkaedRenVlRALLlKHsHqnEkkdlgflprarSqasi
                   ++Vldq++ sgql+++ R  V +AL + H+Hqn kk  +++p++rS+a+i
   mKIAA4136   213 DMVLDQQVSSGQLNEDVRHRVHEALMKQHHHQNQKKLANRIPIVRSFADI 262  

                   GkklshhhaqsaslleevpegpvtsgeplspqssprdlemqtlhevggsG
                   Gkk+s      + +++++          +spqs+      +  +e +++ 
   mKIAA4136   263 GKKQSE-----PNSMDKNAG------QVVSPQSA------PACAENKND- 294  

                   vsreistrdkSK..............................vdlkllkK
                   vsre+st+d+SK+ ++++++++++ + +++ +++++++++++vdl+++kK
   mKIAA4136   295 VSRENSTVDFSKglggqqkghtspcgmkqrldkgpphqqereVDLHFMKK 344  

                   iPedaEAsnVLVGeVDFLErPilAFVRLqeAVlLegllEVPVPvRFLFvL
                   iP++aEAsn LVGe +FL+r ++AFVRL++AVlL gl EVP+P RFLF+L
   mKIAA4136   345 IPPGAEASNILVGELEFLDRTVVAFVRLSPAVLLQGLAEVPIPSRFLFIL 394  

                   LGPsgkgqdYHEIGRaiATLMsDevFhdvAYlAkdReDLLsgIdeFLDcs
                   LGP gkgq+YHEIGR+iATLM+DevFhdvAY+AkdR+DL sgIdeFLD++
   mKIAA4136   395 LGPLGKGQQYHEIGRSIATLMTDEVFHDVAYKAKDRNDLVSGIDEFLDQV 444  

                   iVLPPgEvdpe<-*
                   +VLPPgE+dp+   
   mKIAA4136   445 TVLPPGEWDPS    455  

HCO3_cotransp: domain 1 of 1, from 495 to 1009: score 1230.5, E = 0
                   *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL
                      +L+RTGR+FGGLI+DiKR++P+++SDfrDA+++QcLA+++F+Y+A++
   mKIAA4136   495    ELQRTGRIFGGLILDIKRKAPFFWSDFRDAFSLQCLASFLFLYCACM 541  

                   SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP
                   SP+ITFGGLLGe+Teg+++++Esl++++++Gi++sL++gQPL+IlGsTGP
   mKIAA4136   542 SPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFGGQPLTILGSTGP 591  

                   lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT
                   +LVFE++lFkFCk +gl+YL++R  IGlW+a+++++lVAt++S+LV+yiT
   mKIAA4136   592 VLVFEKILFKFCKEYGLSYLSLRASIGLWTATLCIILVATDASSLVCYIT 641  

                   RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp
                   RFT+E+Fa+LI++IFIYE+++KL+ + +++P+n++  l++lt+ysC+c++
   mKIAA4136   642 RFTEEAFASLICIIFIYEALEKLFELSETYPINMHNDLELLTQYSCNCME 691  

                   Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp
                   P  +++ +l+e+++ + ++++i w +lt+sec++++g+++g +cg+ +p+
   mKIAA4136   692 PHSPSNDTLKEWRESNLSASDIIWGNLTVSECRSLHGEYVGRACGHGhPY 741  

                   qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli
                   +P+++++S+iL+f T +++ +LK+FK+Sr+FP+kvR++++DF+V+++Il 
   mKIAA4136   742 VPDVLFWSVILFFSTVTMSATLKQFKTSRYFPTKVRSIVSDFAVFLTILC 791  

                   MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa
                   Mvl+Dy ig ++++KL+VPs++kPT+++ RGWf+ Pl   g+nPwW+++a
   mKIAA4136   792 MVLIDYAIG-IPSPKLQVPSVFKPTRDD-RGWFVTPL---GPNPWWTIIA 836  

                   AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC
                   A+iPALL+tILIFM+qQITa+I+n+KE+kLkKG+G+HLDLL+vav++gvC
   mKIAA4136   837 AIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAVMLGVC 886  

                   slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV
                   s++GLPW+vAATV+SitHvnsL++eS+csAPGe+P++lg+rEQRVTGl++
   mKIAA4136   887 SIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMI 936  

                   flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa
                   f+L+G SV+m++iLkfIPMpVL+GvFLYMG +SL+GIQlfdR++L+ MPa
   mKIAA4136   937 FILMGSSVFMTSILKFIPMPVLYGVFLYMGASSLKGIQLFDRIKLFWMPA 986  

                   KyqPDviYvRhVptwRvHLFTli<-*
                   K+qPD+iY+RhVp+++vHLFT+i   
   mKIAA4136   987 KHQPDFIYLRHVPLRKVHLFTVI    1009 

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