hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00123/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4135  ( 723 res)   mpf00123

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CUE      Domain that may be involved in binding ubiqu    42.1    7.2e-08   1
ZnF_RBZ  Zinc finger domain                              34.9    1.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CUE        1/1      15    57 ..     1    43 []    42.1  7.2e-08
ZnF_RBZ    1/1     696   720 ..     1    25 []    34.9  1.1e-05

Alignments of top-scoring domains:
CUE: domain 1 of 1, from 15 to 57: score 42.1, E = 7.2e-08
                   *->eneealsqlkemFPnldeevIeavLeantgnveatinnLLegs<-*
                         ++l++l++ FP+++e+v+++++++n++n+ea++ +L ++s   
   mKIAA4135    15    LDIQVLHDLRQRFPEIPEGVVSQCMLQNNNNLEACCRALSQES    57   

ZnF_RBZ: domain 1 of 1, from 696 to 720: score 34.9, E = 1.1e-05
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                        W+C++CtflN++  ++C++C+ p   
   mKIAA4135   696    APWNCDSCTFLNHPALNRCEQCEMP    720  

//