hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj12267/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4134  ( 1021 res)   mfj12267

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                               76.6    3.2e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/2     122   215 ..     1   121 []    49.5  4.4e-10
CA         2/2     238   316 ..     1   121 []    27.0   0.0025

Alignments of top-scoring domains:
CA: domain 1 of 2, from 122 to 215: score 49.5, E = 4.4e-10
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
                      ++A D+D++   + +     e+  + i +++ + +   +++++G   
   mKIAA4134   122    LVALDKDAP--VPFAG----EICAFKIHGqelpfeAVVLNKTSG--- 159  

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                         e+ ++++ p+D E q         +eYt++++A D G  p+++ 
   mKIAA4134   160 ------EGRLRAKSPIDCELQ---------KEYTFIIQAYDCGAGPREAA 194  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                    +         +s  a v+++V+DvN+ aP   
   mKIAA4134   195 WK---------KSHKAVVHIQVKDVNEFAP    215  

CA: domain 2 of 2, from 238 to 316: score 27.0, E = 0.0025
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v A+D+D     + ++     +  Y+i+ ++ +F+Id+++       
   mKIAA4134   238    VEAIDEDCS--PQYSQ-----ICNYEIVTtdvPFAIDRNGN------ 271  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                         i+ t+ L +++q          +Y++ v+A D G+ p       
   mKIAA4134   272 ------IRNTEKLSYDKQ---------HQYEILVTAYDCGQKP------- 299  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                               + v+v V+      P   
   mKIAA4134   300 --------AAQDTLVQVDVKP--VCKP    316  

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