hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj12267/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4134  ( 1021 res)   mfj12267

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cadherin Cadherin domain                                 30.5      4e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cadherin   1/2     105   208 ..     1   107 []     4.9     0.39
Cadherin   2/2     222   311 ..     1   107 []    25.4   0.0013

Alignments of top-scoring domains:
Cadherin: domain 1 of 2, from 105 to 208: score 4.9, E = 0.39
                   *->ysasvpEnapvGtevl..tvtAtDaDdPlgpNgrirYsilggnp..g
                      y++ + En  + t +l++ + A D+D P +  g i  +++ g + + 
   mKIAA4134   105    YHGVITEN--NDTVILdpPLVALDKDAPVPFAGEICAFKIHGQElpF 149  

                   gwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasggg
                       +++ +G+  + ++ + p+D+E +   eY++++ A D+       g 
   mKIAA4134   150 EAVVLNKTSGE-GR-LRAKSPIDCELQ--KEYTFIIQAYDC-------GA 188  

                   pplss......tatvtitVl<-*
                    p+++  ++++ a+v+i+V    
   mKIAA4134   189 GPREAawkkshKAVVHIQVK    208  

Cadherin: domain 2 of 2, from 222 to 311: score 25.4, E = 0.0013
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgri.rYsilggnpggwF
                      y a v E+ ++  ++l+v A+D D  +++ ++i  Y i+ +++   F
   mKIAA4134   222    YKAIVTEG-KIYDSILQVEAIDEDC-SPQYSQIcNYEIVTTDV--PF 264  

                   rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl
                   +Id+ +G     i+ t+ L + ++   +Ye+ v A D+       g++p 
   mKIAA4134   265 AIDR-NGN----IRNTEKLSYDKQ--HQYEILVTAYDC-------GQKPA 300  

                   sstatvtitVl<-*
                    + + v + V    
   mKIAA4134   301 AQDTLVQVDVK    311  

//