hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01338/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4132  ( 147 res)   mpj01338

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
NAP      Nucleosome assembly protein (NAP)              -49.5    1.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NAP        1/1       1   125 [.     1   293 []   -49.5  1.2e-06

Alignments of top-scoring domains:
NAP: domain 1 of 1, from 1 to 125: score -49.5, E = 1.2e-06
                   *->keRieaLKnlQvehdelEakFyeEvlkLEqKYaklYqPlfeKRreII
                                                                     
   mKIAA4132     -    ----------------------------------------------- -    

                   nGvvEPteeeiewkseeeesleEeeelvdEDgelaeeekakeaveeekee
                                                                     
   mKIAA4132     - -------------------------------------------------- -    

                   eeEdpKGIPnFWLTalkNvdlvsemitEeDEpiLkyLkDIkvkesedGep
                                          +mi  +D++ L+y + ++vke+   ++
   mKIAA4132     1 -----------------------AMIRGRDAEMLRYVTSLEVKELRH-PK 26   

                   sGFkLeFhFDsaNpYFtNkVLTKtYhlkseldpsDPfsFegpeiekaeGc
                    G k  F+F   NpYF Nk + K+Y  +            ++  + + ++
   mKIAA4132    27 TGCKFKFFFRR-NPYFRNKLIVKEYEVR-----------SSGR-VVSLST 63   

                   eIdWkkgKnNlTvktikKKQkhKgrgtvRtitktvpndSFFNFFsPpkvp
                   +I W  g     +  i+       r++         + SFF++Fs++ +p
   mKIAA4132    64 PIIWRRGHE--PQSFIR-------RNQD-------LICSFFTWFSDHSLP 97   

                   dEdeDqeeeldEDleelLelDyeIGeviRDrIIPrAVlyFtg.eaie<-*
                   +                   ++ I+e i+++++P++++y++ +e+i    
   mKIAA4132    98 E-------------------SDRIAEIIKEDLWPNPLQYYLCrEGIR    125  

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