hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mie/mie08042/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4130  ( 194 res)   mie08042

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
small_GTP small_GTP: small GTP-binding protein domain   171.3    1.6e-47   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
small_GTP   1/1       4   160 ..     1   186 []   171.3  1.6e-47

Alignments of top-scoring domains:
small_GTP: domain 1 of 1, from 4 to 160: score 171.3, E = 1.6e-47
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes
                         +k++ivGd+++Gk++ll+ +++++ ++  ++p  +++++yv++ 
   mKIAA4130     4    AIRKKLVIVGDGACGKTCLLIVFSKDQ-FPEVYVP--TVFENYVAD- 46   

                   ieedgktitgatfqWgykfnllDtpGlhrqedydalrrlyypevlsslev
                   ie+dgk+         +++ l+Dt+G   qedyd+lr+l+yp+++++l++
   mKIAA4130    47 IEVDGKQ---------VELALWDTAG---QEDYDRLRPLSYPDTDVILMC 84   

                   ldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpgyfv
                   ++++++ +++e+++ek+t+e++h+++  +vpi+lvgnk dl++       
   mKIAA4130    85 FSIDSP-DSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRN------- 124  

                   dlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                     ++h+++++ak+++ep + p++++++++ +++fg++e+   
   mKIAA4130   125 --DEHTRRELAKMKQEP-VKPEEGRDMANRIGAFGYMEC    160  

//