hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mie/mie08042/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4130  ( 194 res)   mie08042

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RHO      Rho (Ras homology) subfamily of Ras-like sma   462.1   2.8e-134   1
RAB      Rab subfamily of small GTPases                 101.9    7.3e-26   1
RAS      Ras subfamily of RAS small GTPases              85.3    7.5e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RAB        1/1       8   182 ..     1   172 []   101.9  7.3e-26
RAS        1/1       8   182 ..     1   167 []    85.3  7.5e-21
RHO        1/1       9   182 ..     1   180 []   462.1 2.8e-134

Alignments of top-scoring domains:
RAB: domain 1 of 1, from 8 to 182: score 101.9, E = 7.3e-26
                   *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk
                       K++++GD + GK++LL  F +d+F+e + +T+  +  +  ievdGk
   mKIAA4130     8    -KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGK 52   

                   rvKLQIWDTAGQERFRSiTssYYRGAvGalLVYDiTnreSFenlkn.Wlk
                   +v L +WDTAGQE +  + +  Y + + +l+++ i +++S en++ +W  
   mKIAA4130    53 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEkWTP 102  

                   elreyadpppenvvimLVGNKsDLeeqRqVstEeaekfic.........D
                   e++  +++    v+i+LVGNK DL+++ +  +E a+   +++ ++++++D
   mKIAA4130   103 EVKHFCPN----VPIILVGNKKDLRNDEHTRRELAKMK-QepvkpeegrD 147  

                   cAeehgllFifETSAKtntNVeeAFeelakkIlkr<-*
                   +A + g + ++E+SAKt   V e+Fe+  +  l+    
   mKIAA4130   148 MANRIGAFGYMECSAKTKDGVREVFEMATRAALQA    182  

RAS: domain 1 of 1, from 8 to 182: score 85.3, E = 7.5e-21
                   *->mreYKlVVlGgGGVGKSALTiQFiqghFvdeYDPTIEDSYRKqieiD
                          KlV++G+G  GK++L i F + +F++ Y PT    Y   ie+D
   mKIAA4130     8    ----KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD 50   

                   gevalLDILDTAGQeEFsAMRdqYmRtGeGFlLVYSitsrqSFeeikkfr
                   g+++ L   DTAGQe++  +R ++  + +  l ++Si+s +S e i +  
   mKIAA4130    51 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 100  

                   eqIlRVKdr.ddvPivLVGNKcDLeneRq............VsteEGkeL
                        VK+   +vPi+LVGNK+DL n+ +++++  + ++++V  eEG+++
   mKIAA4130   101 TP--EVKHFcPNVPIILVGNKKDLRNDEHtrrelakmkqepVKPEEGRDM 148  

                   Akqln.cpFlEtSAKerinVdeaFydLVReirks<-*
                   A+  +   ++E+SAK++  V e+F+   R + +    
   mKIAA4130   149 ANRIGaFGYMECSAKTKDGVREVFEMATRAALQA    182  

RHO: domain 1 of 1, from 9 to 182: score 462.1, E = 2.8e-134
                   *->lVvVGDGaVGKTCLLisYTtnaFPedYVPTVFENYsadvevpDgkpv
                      lV+VGDGa+GKTCLLi+++++ FPe+YVPTVFENY+ad+ev Dgk+v
   mKIAA4130     9    LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQV 54   

                   nLgLWDTAGQEdYDRLRPLSYPqtDVfLiCFSVdspaSfeNVkeKWyPEv
                   +L+LWDTAGQEdYDRLRPLSYP+tDV+L+CFS+dsp+S+eN+ eKW PEv
   mKIAA4130    55 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV 104  

                   khfcPnvPiiLVGtKlDLRnDedtleelsekkqePvtteqGeanskialA
                   khfcPnvPiiLVG+K+DLRnDe+t +el+++kqePv++e+G++     +A
   mKIAA4130   105 KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD-----MA 149  

                   keIGAvkYlECSAltqeGvkeVFeeAiraaLnk<-*
                   ++IGA++Y+ECSA+t++Gv+eVFe+A+raaL++   
   mKIAA4130   150 NRIGAFGYMECSAKTKDGVREVFEMATRAALQA    182  

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