hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mie/mie08042/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4130  ( 194 res)   mie08042

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ras      Ras family                                     336.2    3.7e-97   1
MMR_HSR1 GTPase of unknown function                     -14.8       0.15   1
Arf      ADP-ribosylation factor family                 -92.8      0.088   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MMR_HSR1   1/1       7   121 ..     1   140 []   -14.8     0.15
Arf        1/1       1   179 [.     1   186 []   -92.8    0.088
Ras        1/1       8   181 ..     1   174 []   336.2  3.7e-97

Alignments of top-scoring domains:
MMR_HSR1: domain 1 of 1, from 7 to 121: score -14.8, E = 0.15
                   *->lrvaivGrPNVGKSTLiNaLtgkkraiVsdyPGtTrdpnegrvel..
                       + +ivG    GK+ L+   ++   ++V            ++ +++ 
   mKIAA4130     7    KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT----VFENYVADIev 49   

                   ..dgrqiilvDTPGiiegaskgegelgertleaieeaDlilfVvDasegl
                   +++  ++ l DT+G  + +                ++D+il +  ++ ++
   mKIAA4130    50 dgKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSIDSPD 91   

                   tedytieeDleiadllydeerernleltLqelek..kgkPvilvlNKiD<
                   +                   +e   e++ +e +    ++P+ilv NK D 
   mKIAA4130    92 S-------------------LENIPEKWTPEVKHfcPNVPIILVGNKKD  121  

                   -*
                     
   mKIAA4130     -    -    

Arf: domain 1 of 1, from 1 to 179: score -92.8, E = 0.088
                   *->gflkiflkllglwnKEmRILiLGLDnA.GKTTILykLklgev.vtti
                          +  ++        +++i+G D+A GKT +L  +  ++++   +
   mKIAA4130     1    ----VMAAIRK------KLVIVG-DGAcGKTCLLIVFSKDQFpEVYV 36   

                   PTiGFN.vEtveykn..vkFtvWDvGGQe...slRPlWrnYfpnTdavIf
                   PT+  N v  +e+ +++v + +WD  GQe+ ++lRPl    +p+Td++  
   mKIAA4130    37 PTVFENyVADIEVDGkqVELALWDTAGQEdydRLRPL---SYPDTDVILM 83   

                   V..VDSaDrdRieeakeELhaLLneeeL......adaplLilANKQDlpg
                   + ++DS D+         L ++ +  + + ++   ++p++ ++NK Dl++
   mKIAA4130    84 CfsIDSPDS---------LENIPEKWTPevkhfcPNVPIILVGNKKDLRN 124  

                   A.lseaEireaLgLhelkgskgkVtl.egdRpWeiqgcsAvkGeGLyEGl
                   ++ +  E+++   +      +   + ++g+  +    csA +++G+ E +
   mKIAA4130   125 DeHTRRELAKMKQEPVKPEEGRDMANrIGA--FGYMECSAKTKDGVREVF 172  

                   dWLsnni<-*
                   +   +     
   mKIAA4130   173 EMATRAA    179  

Ras: domain 1 of 1, from 8 to 181: score 336.2, E = 3.7e-97
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      KlV+vGDg++GK++Lli F++++Fpe+Y+pT+ +++y+ ++evdgk+
   mKIAA4130     8    KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQ 53   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvk.kWlee
                   v+L +WDTAGQE++++lrp++Y++++++L +++I+s+dS+en+++kW +e
   mKIAA4130    54 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPeKWTPE 103  

                   ilrhadkdenvpivLVGNKcDLedded.le.l.e.kqkRqVsteeGealA
                   ++++++   nvpi+LVGNK+DL++de+++++l + kq ++V++eeG+++A
   mKIAA4130   104 VKHFCP---NVPIILVGNKKDLRNDEHtRReLaKmKQ-EPVKPEEGRDMA 149  

                   kelgAlpFmETSAKtneNVeeaFeelareilk<-*
                    ++gA+ +mE+SAKt+++V e+Fe+++r++l+   
   mKIAA4130   150 NRIGAFGYMECSAKTKDGVREVFEMATRAALQ    181  

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