hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj49110/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4129 ( 1125 res) mfj49110 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PDZ PDZ domain (Also known as DHR or GLGF) 240.5 2.4e-68 5 WW WW domain 98.4 1.4e-25 2 Guanylate_kin Guanylate kinase 7.0 0.00017 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Guanylate_kin 1/1 26 122 .. 1 107 [] 7.0 0.00017 WW 1/2 182 211 .. 1 30 [] 54.9 1.7e-12 WW 2/2 241 270 .. 1 30 [] 47.0 4.2e-10 PDZ 1/5 344 425 .. 1 82 [] 30.6 3.6e-05 PDZ 2/5 515 592 .. 1 82 [] 39.1 9.9e-08 PDZ 3/5 711 792 .. 1 82 [] 51.6 1.7e-11 PDZ 4/5 868 960 .. 1 82 [] 70.5 3.4e-17 PDZ 5/5 1021 1100 .. 1 82 [] 58.8 1.2e-13 Alignments of top-scoring domains: Guanylate_kin: domain 1 of 1, from 26 to 122: score 7.0, E = 0.00017 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TR PR+gEv G+DY F + + e+ + + + LE ++++GNyYGT k mKIAA4129 26 TRSPREGEVPGVDYSFLT-VKEFLDLEQSGTLLEVGTYEGNYYGTPK 71 eaVrqvaksGkiciLDvepQGvkqlr..taelsNPvsvFIaPpSlqelek + + v+ + ++ +++ +l++++++ P+ + +S ++++ mKIAA4129 72 PPSQPVSGKVIT------TDALHSLQsgSKQST-PK----RTKSYNDMQN 110 rLrgrnketEEs<-* + EE+ mKIAA4129 111 AGIVHPENEEEE 122 WW: domain 1 of 2, from 182 to 211: score 54.9, E = 1.7e-12 *->LppgWeerkdpdGrpYYyNhnTktTqWekP<-* Lp++We++++++G +Y+++hnTktT+W +P mKIAA4129 182 LPENWEMAYTENGEVYFIDHNTKTTSWLDP 211 WW: domain 2 of 2, from 241 to 270: score 47.0, E = 4.2e-10 *->LppgWeerkdpdGrpYYyNhnTktTqWekP<-* Lp gWe++ dp +YY++h++++Tq+e+P mKIAA4129 241 LPAGWEKIEDPVYGVYYVDHINRKTQYENP 270 PDZ: domain 1 of 5, from 344 to 425: score 30.6, E = 3.6e-05 *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke ++l k + g+Gf+++gg++ ++ + +++++ + g+A+ +G+ + mKIAA4129 344 HTKLRK--SSRGFGFTVVGGDEPdeFLQIKSLVLD-GPAALDGKMET 387 GDqIlsvNGqdvenlsheravlalkgsgg.sevtLtil<-* GD+I+svN++ v +++h+++v++ ++++ + +v L++ mKIAA4129 388 GDVIVSVNDTCVLGHTHAQVVKIFQSIPIgASVDLELC 425 PDZ: domain 2 of 5, from 515 to 592: score 39.1, E = 9.9e-08 *->evtlekevkrgglGfsikggsdk.givvsevlpGsgaAeagGrLkeG +v++ k ++ g+Gf+i+ ++g v+ ++ + + G LkeG mKIAA4129 515 TVHIVK--GPMGFGFTIADSPGGgGQRVKQIVDS---PRCRG-LKEG 555 DqIlsvNGqdvenlsheravlalkgsgg.sevtLtil<-* D I++vN ++v l+h ++v++l +++++sevtL+++ mKIAA4129 556 DLIVEVNKKNVQALTHNQVVDMLIECPKgSEVTLLVQ 592 PDZ: domain 3 of 5, from 711 to 792: score 51.6, E = 1.7e-11 *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke ++ l + k g+Gf+i gg++ +++i++ +++p gaA+ +GrL+ mKIAA4129 711 DIFLWR--KETGFGFRILGGNEPgePIYIGHIVPL-GAADTDGRLRS 754 GDqIlsvNGqdvenlsheravlalkgsgg.sevtLtil<-* GD ++ v+G++v + sh +v++++++ ++++v Lt++ mKIAA4129 755 GDELICVDGTPVIGKSHQLVVQLMQQAAKqGHVNLTVR 792 PDZ: domain 4 of 5, from 868 to 960: score 70.5, E = 3.4e-17 *->evtlekevkrgglGfsikggsdk..............givvsevlpG +v + ++ +++g+Gf i++ + ++ +++ ++ + + ++++G mKIAA4129 868 DVEIRRG-ENEGFGFVIVSSVSRpeagttfgnacvamPHKIGRIIEG 913 sgaAeagGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil< ++A++ G+Lk+GD+Il+vNG +++n sh ++v ++k++g+ +vtL i+ mKIAA4129 914 -SPADRCGKLKVGDRILAVNGCSITNKSHSDIVNLIKEAGN-TVTLRII 960 -* mKIAA4129 - - PDZ: domain 5 of 5, from 1021 to 1100: score 58.8, E = 1.2e-13 *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke +v le+ + g+Gfs++gg + + ++v ++ ++ g+Ae+ G+ ++ mKIAA4129 1021 TVELER--GAKGFGFSLRGGREYnmDLYVLRLAED-GPAERCGKMRI 1064 GDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-* GD Il++NG+ + n+ h ra++++k+ g v+L ++ mKIAA4129 1065 GDEILEINGETTKNMKHSRAIELIKNGGR-RVRLFLR 1100 //