hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbf/mbf00283/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4128  ( 1002 res)   mbf00283

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Oxysterol_BP Oxysterol-binding protein                  263.5    2.8e-75   1
PH           PH domain                                   24.9     0.0019   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PH             1/1     122   216 ..     1    92 []    24.9   0.0019
Oxysterol_BP   1/1     598   990 ..     1   440 []   263.5  2.8e-75

Alignments of top-scoring domains:
PH: domain 1 of 1, from 122 to 216: score 24.9, E = 0.0019
                   *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk....kkpkgs
                        +eG++lkk +  +k+w+kR+fvL n+ L y k + + ++ k  gs
   mKIAA4128   122    DRHEGFMLKKRkwPLKGWHKRFFVLDNGMLKYSKAPLdiqkGKVHGS 168  

                   ipLsgiqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   i++ g++v+ +++  +   + + t+++  ++l+ +s++  + Wv+ ++ +
   mKIAA4128   169 IDV-GLSVMSIKK--KARRIDLDTeEH-IYHLKVKSQDWFDAWVSKLRHH 214  

                   ir<-*
                        
   mKIAA4128   215 RL    216  

Oxysterol_BP: domain 1 of 1, from 598 to 990: score 263.5, E = 2.8e-75
                   *->kSqhsSsss...ltsklkfilsepkdltrRldipeeslspisLwsis
                      + +++  +s++ l  +l   +  ++ +t  l +p    s+i+Lw i+
   mKIAA4128   598    NTSVADNISrqiLNGELTGGAFRNGRRTC-LPAPCPDTSNINLWNIL 643  

                   qlwvGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrW
                   ++++GkdLsk  +Pv  nEp+  Lq + e++eY+elLdkA    d+ +r 
   mKIAA4128   644 RNNIGKDLSKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYER- 692  

                   flyvaastlssysettrrv.kKPlNPlLGEtFelkrendElpnkgqyrll
                   ++ vaa+ +s+y +t +r ++KP+NP+LGEt e +re+    +   +r++
   mKIAA4128   693 MVLVAAFAVSGYCSTYFRAgSKPFNPVLGETYECIRED---KG---FRFF 736  

                   sEQVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmkeGltvht
                   sEQVSHHPP+sA + es++    + + +  k kF+Gks+++ + G+ + +
   mKIAA4128   737 SEQVSHHPPISACHCESKN--FVFWQDIRWKNKFWGKSMEILPVGT-LNV 783  

                   ildikdingkpEtYtwtqPnttveGILvGkpfvElSGdesv..insstGd
                    l+  +       Y+w +++t +++IL G +++E  G++  ++++ss   
   mKIAA4128   784 TLPKYG-----DYYVWNKVTTCIHNILSGRRWIEHYGEVTLrnTKSSV-C 827  

                   kcvIeFktkGyfSGkkdsfkgrivkdpdgnkdKEkklytlsGkWndsmyi
                    c + F++  y    ++++ g ++ d  g     k+   l GkW +  y+
   mKIAA4128   828 ICKLTFVKVNYWNSNVNEVQGVVI-DQEG-----KVVHRLFGKWHEGLYC 871  

                   kKvqsksegelflDahktphealkvrpLeeqhelesrkaWkkvadalkvg
                     + s             +                +++ + + ++ ++ +
   mKIAA4128   872 GVAPS-------------AKC--------------IWRPGSLPTNYELYY 894  

                   nltvftktkneleerqRpllkptesrgvedqralfkrledkedldkeekk
                   ++t f+ ++nel++ ++ ll+pt++r ++dqr l++++ + ++++k++++
   mKIAA4128   895 GFTRFAVELNELDPVLKDLLPPTDARFRPDQRFLEEGNLEAAAAEKQRVE 944  

                   ekpeaddkerkqkgslyepkwfvpsgqpvtdKeklyikarkeyWefrKk<
                   e ++   +  +    +  pk f +     +      ++++  yWe rK  
   mKIAA4128   945 ELQRSRRRYMEENNLEHIPKFFKK-VIDAN--QREAWVSNDTYWELRKD  990  

                   -*
                     
   mKIAA4128     -    -    

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