hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid09093/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4124  ( 1066 res)   mid09093

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Cu-oxidase_2 Multicopper oxidase                         74.1    2.9e-18   2
Cu-oxidase   Multicopper oxidase                         29.0    7.9e-06   1
Cu-oxidase_3 Multicopper oxidase                         -9.6    0.00056   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Cu-oxidase     1/1     225   362 ..     1   187 []    29.0  7.9e-06
Cu-oxidase_2   1/2     231   362 ..     1   151 []     5.6   0.0012
Cu-oxidase_3   1/1     793   904 ..     1   124 []    -9.6  0.00056
Cu-oxidase_2   2/2     934  1060 ..     1   151 []    66.7  4.8e-16

Alignments of top-scoring domains:
Cu-oxidase: domain 1 of 1, from 225 to 362: score 29.0, E = 7.9e-06
                   *->edtvitLsDWY.hkdakelek.llasgklptgwvn.mrppvpdavLI
                      +++v     WY  +++k+ + + ++  k ++++++++r+     + I
   mKIAA4124   225    FSVVDENLSWYlEDNIKTFCSePEKVDKDNEDFQEsNRM-----YSI 266  

                   NGkggflgncapkdvndslpCllkgavgadlavltvepGKtYRlRiihNv
                   NG                       ++ ++l+ l++++  ++++ + +++
   mKIAA4124   267 NG-----------------------YTFGSLPGLSMCAADRVKWYLFGMG 293  

                   glddslnFsIdGHkmTVVEvGDVWDGvyvkaPftvdsldIfvGQrysVlv
                      d ++ +++G       +        +   +++d +++f+++  ++ +
   mKIAA4124   294 NEVDVHSAFFHGQ------A-------LTSRNYQTDIINLFPATLIDAYM 330  

                   tAknqpvgnYwivanPnmgssyrfg.ipafdngtttaiLrYsga<-*
                    A ++ +g +++++           +  + + g+++ + + +++   
   mKIAA4124   331 VA-QN-PGVWMLSC----------QnLNHLKAGLQAFFQVRDCN    362  

Cu-oxidase_2: domain 1 of 2, from 231 to 362: score 5.6, E = 0.0012
                   *->dtppkpptllqitgmrydwsi.gngdtsigingfdndmnrpdnnppl
                      + ++++++  +       ++ + ++ ++++ +++ ++     n+ ++
   mKIAA4124   231    NLSWYLEDNIKT------FCSePEKVDKDNEDFQESNRMYSINGYTF 271  

                   ggtnvitlpngdrveivlqNndtg.lpHPfHLHGhdFqVlgrgggnwdpk
                   g+ + + +   drv ++l +++++ + H+  +HG   q l + + +    
   mKIAA4124   272 GSLPGLSMCAADRVKWYLFGMGNEvDVHSAFFHG---QALTSRNYQ---- 314  

                   ynlvnPprRDTvqvppggwvairFkaDNPGvWlfHCHilrwHldqGmamv
                            D +++ p   +  +++a NPGvW++ C +l  Hl +G+ + 
   mKIAA4124   315 --------TDIINLFPATLIDAYMVAQNPGVWMLSCQNL-NHLKAGLQAF 355  

                   fvvdp.s<-*
                   f v++     
   mKIAA4124   356 FQVRDcN    362  

Cu-oxidase_3: domain 1 of 1, from 793 to 904: score -9.6, E = 0.00056
                   *->tvtegtvtplggterpvitvNGqfPGPtIrvreGDtvvvnVtNnLkd
                        + +    + +           ++GP I+++ GD v v ++N   +
   mKIAA4124   793    REQVKRRAEDEHL---------GILGPPIHANVGDKVKVVFKNMA-T 829  

                   enttiHWHGlrqpgtpwmDGvpGvTqCPIpPGesftYrFtvtqqaGT...
                    + +iH HG++   +         T  P  PGe +tY++++++ +G +++
   mKIAA4124   830 RPYSIHAHGVKTESS---------TVVPTLPGEVRTYTWQIPERSGAgre 870  

                   ......yWYHsHsswlrAQqayaGlyGaliIrppas<-*
                   ++   +  Y s ++    +  y Gl G+li+  ++    
   mKIAA4124   871 dsacipWAYYSTVDRV--KDLYSGLIGPLIVCRKSY    904  

Cu-oxidase_2: domain 2 of 2, from 934 to 1060: score 66.7, E = 4.8e-16
                   *->dtppkpptllqitgmrydwsigngdtsigingfdndmnrpdnnpplg
                      ++  + + + ++             ++++  ++ ++  ++ n+  +g
   mKIAA4124   934    NIKTYSEHPEKV-------------NKDNEEFLESNKMHAINGKMFG 967  

                   gtnvitlpngdrveivlqNndtg.lpHPfHLHGhdFqVlgrgggnwdpky
                   +   +t+  +d v +++ +++++ + H+ H+HGh+Fq   rg        
   mKIAA4124   968 NLQGLTMHVKDEVNWYVMGMGNEiDLHTVHFHGHSFQYKHRGVYS----- 1012 

                   nlvnPprRDTvqvppggwvairFkaDNPGvWlfHCHilrwHldqGmamvf
                           D++++ pg + ++++    PG Wl+HCH+   H+ +Gma+ +
   mKIAA4124  1013 -------SDVFDLFPGTYQTLEMFPQTPGTWLLHCHVT-DHVHAGMATTY 1054 

                   vvdp.s<-*
                    v p +   
   mKIAA4124  1055 TVLPvE    1060 

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