hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05860/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4123  ( 639 res)   mbg05860

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       242.6    5.7e-69   7
F-box    F-box domain                                    34.2    2.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1     215   264 ..     1    44 []    34.2  2.9e-06
WD40       1/7     328   363 ..     1    38 []    25.6   0.0012
WD40       2/7     368   403 ..     1    38 []    47.2  3.6e-10
WD40       3/7     408   443 ..     1    38 []    27.9  0.00024
WD40       4/7     451   486 ..     1    38 []    40.3  4.3e-08
WD40       5/7     491   526 ..     1    38 []    38.6  1.4e-07
WD40       6/7     531   566 ..     1    38 []    45.4  1.3e-09
WD40       7/7     580   615 ..     1    38 []    31.2  2.4e-05

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 215 to 264: score 34.2, E = 2.9e-06
                   *->lldLPde....llleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.
                      +  LP  + +++ ++Ils+Ld+k+l+++ lV+k w+++ ++  lw++
   mKIAA4123   215    ITALPARgldhIAENILSYLDAKSLCAAELVCKEWYRVTSDGmLWKk 261  

                   kll<-*
                    +    
   mKIAA4123   262 LIE    264  

WD40: domain 1 of 7, from 328 to 363: score 25.6, E = 0.0012
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++  +  +++V+c+ ++      ++sg rD+tikiWd   
   mKIAA4123   328    QRIHCRsETSKGVYCLQYDDQ---KIVSGLRDNTIKIWD    363  

WD40: domain 2 of 7, from 368 to 403: score 47.2, E = 3.6e-10
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ec+++l+gHt++V c+ ++     ++++gS+D t+++Wd   
   mKIAA4123   368    ECKRILtGHTGSVLCLQYDER---VIITGSSDSTVRVWD    403  

WD40: domain 3 of 7, from 408 to 443: score 27.9, E = 0.00024
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e l +l +H  +V  ++f+     +++++S D++i +Wd   
   mKIAA4123   408    EMLNTLiHHCEAVLHLRFNNG---MMVTCSKDRSIAVWD    443  

WD40: domain 4 of 7, from 451 to 486: score 40.3, E = 4.3e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ +vl gH ++V+ v+f+     +++s+S D+tik+W+   
   mKIAA4123   451    TLRRVLvGHRAAVNVVDFDDK---YIVSASGDRTIKVWN    486  

WD40: domain 5 of 7, from 491 to 526: score 38.6, E = 1.4e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e +++l+gH+ ++ c+ +      l++sgS+D+ti++Wd   
   mKIAA4123   491    EFVRTLnGHKRGIACLQYRDR---LVVSGSSDNTIRLWD    526  

WD40: domain 6 of 7, from 531 to 566: score 45.4, E = 1.3e-09
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       cl+vl+gH+  V+c++f+     +++sg  Dg+ik+Wd   
   mKIAA4123   531    ACLRVLeGHEELVRCIRFDNK---RIVSGAYDGKIKVWD    566  

WD40: domain 7 of 7, from 580 to 615: score 31.2, E = 2.4e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       cl++l  H++ V  + f+     +++s+S+D ti iWd   
   mKIAA4123   580    LCLRTLvEHSGRVFRLQFDEF---QIVSSSHDDTILIWD    615  

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