hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg19439a/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4122  ( 790 res)   mbg19439a

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CULLIN   Cullin                                         285.1    5.1e-81   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CULLIN     1/1     461   608 ..     1   159 []   285.1  5.1e-81

Alignments of top-scoring domains:
CULLIN: domain 1 of 1, from 461 to 608: score 285.1, E = 5.1e-81
                   *->dkvlvlFkYiedKDVFekyYkkhLAKRLllnrSaSdDaEenmitkLK
                      ++v+v+FkYiedKDVF+k+Y k+LAKRL+++ SaSdDaE++mi+kLK
   mKIAA4122   461    NQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLK 507  

                   qecGyPaefTsKLegMFrDislSkdltqsFkdylannpgnaskksiDlsn
                   q+cG+  e+TsKL++MF+Di +Skdl++ Fk++l+n    +  + +D+s 
   mKIAA4122   508 QACGF--EYTSKLQRMFQDIGVSKDLNEQFKKHLTN----SEPLDLDFS- 550  

                   vrVLtsgyWPtystekikveinLPqeLskaleeFeeFYlakhsGRkLtWl
                   ++VL+sg+WP++++     ++ LP+eL+++++ F+ FY ++hsGRkLtWl
   mKIAA4122   551 IQVLSSGSWPFQQS----CTFALPSELERSYQRFTAFYASRHSGRKLTWL 596  

                   hslgsgevkanf<-*
                   ++l++ge+  n    
   mKIAA4122   597 YQLSKGELVTNC    608  

//