hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg19439a/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4122  ( 790 res)   mbg19439a

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cullin   Cullin family                                  996.4   6.8e-296   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cullin     1/1      35   690 ..     1   656 []   996.4 6.8e-296

Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 35 to 690: score 996.4, E = 6.8e-296
                   *->WekLrdaidqiltnlknvsplsyeeLYtaVYniCtstsa........
                      W+ Lr +i+q++ +++++++++y+eLYt+VYn+Cts+ ++++ ++ +
   mKIAA4122    35    WDDLRAGIQQVY-TRQSMAKSRYMELYTHVYNYCTSVHQsnqargag 80   

                   .............vphklgekLYnrLkeyleeyvkalrkslleisddenl
                    +++++++++++++++++g +LY+rLke+l++y+ +l+k  ++  +de+ 
   mKIAA4122    81 vppskskkgqtpgGAQFVGLELYKRLKEFLKNYLTNLLKDGEDL-MDESV 129  

                   LkeyikeWkdfstsmkmindifmYLdRyyvkrni.dgkkevyeiyeLgLd
                   Lk+y+++W+d+ +s+k++n+i+ YL+R++v+r++++g k +yeiy+L+L+
   mKIAA4122   130 LKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECdEGRKGIYEIYSLALV 179  

                   iWreelfdnikdrlidalLdlIekeRkGeaidr.liknvvdmlvsLglde
                   +Wr++lf+++++++++a+L+lIekeR+Ge+i+ +li++vv+++v+Lgl+e
   mKIAA4122   180 TWRDCLFRPLNKQVTNAVLKLIEKERNGETINTrLISGVVQSYVELGLNE 229  

                   kDmkk..qklkvYkedFEkpFLeaTseFYkkEsskfLqensvseYlkkvE
                   +D  +++++l+vYke+FE +FL +T++FY++Es +fLq+n+v+eY+kk+E
   mKIAA4122   230 DDAFAkgPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAE 279  

                   krLeeEeeRvrlYLhsstekklievvekvLIekHlefLlmehsefq.Lld
                   +rL eE+ Rv+ YLh+st + l++++e+vLIekHle +   h+efq+Lld
   mKIAA4122   280 ARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIF---HTEFQnLLD 326  

                   nnkleDLrrMYrLlsRvpnGLeplrkilekhvkkeGlalvskla..aetd
                   ++k+eDL+rMY+L+sR+ +GL +l+k le+h++++Gla+++k+ + a +d
   mKIAA4122   327 ADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGeaALND 376  

                   pkdyVeeLLelhdkydslvneaFnnDplFlnaLdkAfesfiNsnvvtka.
                   pk yV+++L++h+ky++lv  aFnnD++F+ aLdkA+++fiN n+vtk  
   mKIAA4122   377 PKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMa 426  

                   ...skspELLAkYcDdlLKKgsKgleeeeleekldkiivlfkyiedKDvF
                   +++skspELLA+YcD+lLKK+sK++ee+ele++l++++v+fkyiedKDvF
   mKIAA4122   427 qssSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVF 476  

                   ekfYrkmLAkRLLngkSasLddaEkrmiekLKqvecGyefTsKLegMfkD
                   +kfY kmLAkRL++++Sas ddaE +mi+kLKq +cG+e+TsKL++Mf+D
   mKIAA4122   477 QKFYAKMLAKRLVHQNSAS-DDAEASMISKLKQ-ACGFEYTSKLQRMFQD 524  

                   islSkelnnsFknhlennndnldlkledeeneEgidlsvkvLstgfWPtl
                   i +Sk+ln++Fk+hl+n   +              d+s++vLs+g+WP++
   mKIAA4122   525 IGVSKDLNEQFKKHLTNSEPL------------DLDFSIQVLSSGSWPFQ 562  

                   p.epsinfnLPeelekalerFeefYlkkhsgpdRkLtWlhsLGkgelkae
                   +++    f LP ele++++rF+ fY ++hsg  RkLtWl++L+kgel  +
   mKIAA4122   563 QsCT---FALPSELERSYQRFTAFYASRHSG--RKLTWLYQLSKGELVTN 607  

                   fndgtkskyeltVstyQmavLLLFNdkeeltyeelqeatqipedeLrrtL
                    ++++   y+l+ st+Qma+LL++N+ + +t+++l ++tqi  d L + L
   mKIAA4122   608 CFKNR---YTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVL 654  

                   qsLlkakvllllllryetpgekspkdkeispntkfslNenft<-*
                   q+Llk k+l+l+ +        ++++ e++ +t  +l   ++   
   mKIAA4122   655 QILLKSKLLVLEDEN------ANVDEVELKSDTLIKLYLGYK    690  

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