hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4121  ( 391 res)   mph01062

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SSXT       SSXT protein (N-terminal region)             147.9    1.7e-40   1
Extensin_2 Extensin-like region                        -134.4       0.31   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SSXT         1/1      15    80 ..     1    78 []   147.9  1.7e-40
Extensin_2   1/1      55   389 ..     1   385 []  -134.4     0.31

Alignments of top-scoring domains:
SSXT: domain 1 of 1, from 15 to 80: score 147.9, E = 1.7e-40
                   *->RGkanmqGGGGGGvPqkVnQsTIQKlLDENsrLIqcIqEYqnkGrAd
                      RGk+            + + + IQK+LDEN +LIqcI +YqnkG+A 
   mKIAA4121    15    RGKG------------EITPAAIQKMLDENNHLIQCIMDYQNKGKAS 49   

                   ECiqYQqvLHRNLvYLAtlADpnlnsqlklp<-*
                   EC qYQq+LH NLvYLAt+AD+n+n+q++lp   
   mKIAA4121    50 ECSQYQQILHTNLVYLATIADSNQNMQSLLP    80   

Extensin_2: domain 1 of 1, from 55 to 389: score -134.4, E = 0.31
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                         l   lv+l    +++ + +   P Pp+     +  P   p    
   mKIAA4121    55    QQILHTNLVYLATIADSNQNMQSLLPAPPT-----QTMPM-GPGGMS 95   

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkp..yvYkSPPpPkyvYkSPPp
                   +S PPp +p     P     v   PP P+ ++ +    P P+      P 
   mKIAA4121    96 QSGPPP-PPRSHNMPSDG-MVGGGPPAPHMqnQMNGQMPGPNHMPMQGPG 143  

                   Pv...ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkS
                   P++ +   +S   P+ s      y+   P +     +S P      +  S
   mKIAA4121   144 PSqlsMTNSSMNMPSSSHGSMGGYNHSVPSS-----QSMPVQN--QMTMS 186  

                   PPPPpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiykspp
                      P    ++ P P  +         P   P + + pP       y+ pp
   mKIAA4121   187 QGQP--MGNYGPRPNMN-------MQPNQGPMMHQQPPSQQ----YNMPP 223  

                   ppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppky
                      +h   Y+    P       + +q    + +   PP   Y+       
   mKIAA4121   224 GGAQH---YQGQQAPMG--LMGQVNQGSHMMGQRQMPP---YR------- 258  

                   VYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPt....yvYkS
                       pP   +p  Y+     ++ y       y      PP + ++ +Y  
   mKIAA4121   259 ----PPQQGPPQQYS----GQEDYY---GDQYSHGGQGPPEgmnqQYYPD 297  

                   pPpPykpptppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpP
                       y   +    y+ PPP       +  Pp    + + +p    Y   P
   mKIAA4121   298 GNSQY--GQQQDAYQGPPPQ------QGYPP----QQQQYPGQQGY---P 332  

                   ppvysPPPPyvYssPPPPvy.............vynsaPvykksPPkhhY
                      +s  P    +  P P y++ +++++++ +++    P + ++P + +Y
   mKIAA4121   333 GQQQSYGPS---QGGPGPQYpnypqgqgqqyggYRPTQPGPPQPPQQRPY 379  

                   iYsSPPPphh<-*
                    Y       +   
   mKIAA4121   380 GYDQGQYGNY    389  

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