hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj20275/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4120  ( 706 res)   mfj20275

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RPEL     RPEL repeat                                     68.3    1.6e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RPEL       1/2     587   612 ..     1    26 []    37.0  4.2e-07
RPEL       2/2     625   650 ..     1    26 []    38.8  1.2e-07

Alignments of top-scoring domains:
RPEL: domain 1 of 2, from 587 to 612: score 37.0, E = 4.2e-07
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                       +L r+LSqRPt eELe+rnIL+ ++   
   mKIAA4120   587    NTLIRRLSQRPTAEELEQRNILQPKN    612  

RPEL: domain 2 of 2, from 625 to 650: score 38.8, E = 1.2e-07
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L rKLSqRPt++EL +r IL+++e   
   mKIAA4120   625    RRLTRKLSQRPTVAELLARKILRFNE    650  

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