hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj57129/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4119  ( 1217 res)   mfj57129

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                       57.6    1.6e-12   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/4     270   303 ..     1    34 []    21.8    0.095
TPR        2/4     304   337 ..     1    34 []    18.6     0.86
TPR        3/4     338   371 ..     1    34 []     1.2  3.7e+02
TPR        4/4     615   648 ..     1    34 []    22.3    0.069

Alignments of top-scoring domains:
TPR: domain 1 of 4, from 270 to 303: score 21.8, E = 0.095
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e  + +Gn  +++++++ A+ yy++A+e  P+n   
   mKIAA4119   270    GELMKMRGNEEFSKEKFEIAVIYYTRAIEYRPEN    303  

TPR: domain 2 of 4, from 304 to 337: score 18.6, E = 0.86
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         + n+++++l++g++  A+ + ++A+ l  +    
   mKIAA4119   304    HLLYGNRALCFLRMGQFRNALSDGKRAIVLKNTW    337  

TPR: domain 3 of 4, from 338 to 371: score 1.2, E = 3.7e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++ +y+   a+  lg+yd A+++  kA +l  n+   
   mKIAA4119   338    PKGHYRYCDALCMLGEYDWALQANIKAQKLCKND    371  

TPR: domain 4 of 4, from 615 to 648: score 22.3, E = 0.069
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        a++ +G +ylk++++ eA++++ekA +l       
   mKIAA4119   615    CLAYCGIGKVYLKKNRFLEALNHFEKAKTLISRL    648  

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