hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj57129/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4119  ( 1217 res)   mfj57129

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        68.6    1.3e-16   5
TPR_1    Tetratricopeptide repeat                        57.2    3.5e-13   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/4     270   303 ..     1    34 []    21.1    0.026
TPR_2      1/5     270   303 ..     1    34 []    19.7     0.07
TPR_1      2/4     304   337 ..     1    34 []     8.9      3.1
TPR_2      2/5     304   337 ..     1    34 []    15.1      1.7
TPR_1      3/4     338   371 ..     1    34 []    11.5      1.5
TPR_2      3/5     338   371 ..     1    34 []    12.3      7.9
TPR_2      4/5     575   611 ..     1    34 []     2.6  1.1e+02
TPR_1      4/4     615   648 ..     1    34 []    21.4    0.021
TPR_2      5/5     615   648 ..     1    34 []    21.1    0.026

Alignments of top-scoring domains:
TPR_1: domain 1 of 4, from 270 to 303: score 21.1, E = 0.026
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       e  + +Gn  ++++k++ A+ +y++A+e +P+n   
   mKIAA4119   270    GELMKMRGNEEFSKEKFEIAVIYYTRAIEYRPEN    303  

TPR_2: domain 1 of 5, from 270 to 303: score 19.7, E = 0.07
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       e+  ++G+  + ++++e A+ +y +A+e+ P+n   
   mKIAA4119   270    GELMKMRGNEEFSKEKFEIAVIYYTRAIEYRPEN    303  

TPR_1: domain 2 of 4, from 304 to 337: score 8.9, E = 3.1
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                         y n+++++l++g++  A+ + ++A+ l  +    
   mKIAA4119   304    HLLYGNRALCFLRMGQFRNALSDGKRAIVLKNTW    337  

TPR_2: domain 2 of 5, from 304 to 337: score 15.1, E = 1.7
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        ++ n++l+ +++g++  Al + ++A+ l  ++   
   mKIAA4119   304    HLLYGNRALCFLRMGQFRNALSDGKRAIVLKNTW    337  

TPR_1: domain 3 of 4, from 338 to 371: score 11.5, E = 1.5
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      ++ +y+   a+  lg+yd A++a  kA +l  n+   
   mKIAA4119   338    PKGHYRYCDALCMLGEYDWALQANIKAQKLCKND    371  

TPR_2: domain 3 of 5, from 338 to 371: score 12.3, E = 7.9
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      ++++y+  +a+  lg+y+ Al+a  kA +l +n+   
   mKIAA4119   338    PKGHYRYCDALCMLGEYDWALQANIKAQKLCKND    371  

TPR_2: domain 4 of 5, from 575 to 611: score 2.6, E = 1.1e+02
                   *->aealynlGlayyklgdye...eAleayekAleldPnn<-*
                      + + y l+++++  g++e+ +eA++ +++ +e +Pn    
   mKIAA4119   575    VLVVYGLAVSLLGIGRPEelsEAENQFKRIIEHYPNE    611  

TPR_1: domain 4 of 4, from 615 to 648: score 21.4, E = 0.021
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        ay+ +G +ylk++++ eA+ ++ekA  l       
   mKIAA4119   615    CLAYCGIGKVYLKKNRFLEALNHFEKAKTLISRL    648  

TPR_2: domain 5 of 5, from 615 to 648: score 21.1, E = 0.026
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        a++ +G++y+k++++ eAl+++ekA  l  +    
   mKIAA4119   615    CLAYCGIGKVYLKKNRFLEALNHFEKAKTLISRL    648  

//