hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj41141/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4118  ( 248 res)   mfj41141

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sad1_UNC Sad1 / UNC-like C-terminal                     232.1    8.2e-66   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sad1_UNC   1/1      98   231 ..     1   147 []   232.1  8.2e-66

Alignments of top-scoring domains:
Sad1_UNC: domain 1 of 1, from 98 to 231: score 232.1, E = 8.2e-66
                   *->lnyeaksprvilqedkDkympgpCwsfkgsrGfvvieLsepIiveav
                      ++++a +p+vil++d   ++pg+Cw+f+g +G+vvi+L  +++++ +
   mKIAA4118    98    FWNYARPPSVILEPD---VFPGNCWAFEGDKGQVVIRLPGHVQLSDI 141  

                   tLeHveksvspdGnfsSAPKdFeVsgserypdeesTeewvlLGeFtYdld
                   tL+H++ +v+++G+ sSAP+dF+V+g++ ++++     +v+LG+F++d++
   mKIAA4118   142 TLQHPPPTVAHTGGASSAPRDFAVYGLQADDET-----EVFLGKFIFDVQ 186  

                   gknlQtFqlqnpCpyiekqswvkyVklrilSNyGnehYTClYrfRVhGts
                   ++++QtF+lqn+ p++    ++  Vk++ilSN+G++ +TClYr+R hG +
   mKIAA4118   187 KSEIQTFHLQND-PPS----AFPKVKIQILSNWGHPRFTCLYRVRAHGVR 231  

                   <-*
                      
   mKIAA4118     -     -    

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