hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj20353/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4117  ( 1192 res)   mfj20353

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                       616.6   8.6e-181   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FH2        1/1     636  1077 ..     1   499 []   616.6 8.6e-181

Alignments of top-scoring domains:
FH2: domain 1 of 1, from 636 to 1077: score 616.6, E = 8.6e-181
                   *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseisegtvWettvnd
                      pkke kp+  +++L+W k+            P+e+se+++W      
   mKIAA4117   636    PKKEFKPEISMRRLNWLKIG-----------PNEMSENCFW-----I 666  

                   kldeekfLynnldldeleelFaakektkkakkrsvsekksklkkkkvqqn
                   k++e+k+ +n+++l++le +F+++ek+k +++ + +ekk  ++kk++++ 
   mKIAA4117   667 KVNENKY-ENRDLLCKLENTFCCQEKEKRNTN-DFDEKK--VIKKRMKE- 711  

                   lkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvdlle
                   lk+lDpk +qn  l+I+l+s+  ++++e   i+ +ilevDe +ls+++++
   mKIAA4117   712 LKFLDPKIAQN--LSIFLSSF--RVPYEK--IRTMILEVDETQLSESMIQ 755  

                   qLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLipyl
                   +L+k++P   ++e+lk l +++ d    +++L+++eq F +++sn +++l
   mKIAA4117   756 NLIKHLP---DEEQLKSLSQFRSD----YNSLCEPEQ-FAVVMSN-VKRL 796  

                   eeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeliLai
                   ++Rl+a+lfk++Fee+v+++kp++++v++Acee+++Sk F+klLel+L++
   mKIAA4117   797 RPRLSAILFKLQFEEQVNNIKPDIMAVSTACEEIKKSKGFSKLLELVLLM 846  

                   GNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiirkky
                   GNyMNagsr+  +q +GF+LssL+kL+d+Ksad+ktTLLHflv+++++k+
   mKIAA4117   847 GNYMNAGSRN--AQTFGFDLSSLCKLKDTKSADQKTTLLHFLVDVCEEKH 894  

                   pdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsdpeg
                   +d+l+F++dl+h+dkas+v++e+lek+vkq++rq+++lE ++  ++ pe+
   mKIAA4117   895 ADILHFVDDLAHLDKASRVSVEMLEKNVKQMGRQLQQLEKNLETFPPPED 944  

                   hpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpkdrd
                   ++ dkf+++m++F+ +A+e+yekL++ l  + +++++++ yy+ d+k+  
   mKIAA4117   945 LH-DKFVIKMSSFVISANEQYEKLSTLLGSMTQLYQSVMGYYAVDMKK-- 991  

                   vspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalrvke
                   vs eeFF+d+n+F+++F+ a +en    +k++e++e+e+ra++     ke
   mKIAA4117   992 VSVEEFFNDLNNFRTSFMLALKEN----IKKREAAEKEKRARIA----KE 1033 

                   tteyeqssskqkeneerrvernplmdfeverdflgvldsllkelrtdssf
                    +e+e+++ +q+e       ++ l ++++e+d++gv+dsll++l+++++f
   mKIAA4117  1034 RAEKERLE-RQQE-------KKRLLEMKTEGDETGVMDSLLEALQSGAAF 1075 

                   er<-*
                   ++   
   mKIAA4117  1076 RD    1077 

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