hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj20353/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4117 ( 1192 res) mfj20353 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FH2 Formin Homology 2 Domain 528.3 5.6e-155 1 Drf_GBD Diaphanous GTPase-binding Domain 257.6 1.7e-73 1 Drf_FH3 Diaphanous FH3 Domain 230.5 2.3e-65 1 Drf_DAD DRF Autoregulatory Domain 29.1 0.0001 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Drf_GBD 1/1 114 298 .. 1 322 [] 257.6 1.7e-73 Drf_DAD 1/2 302 316 .. 1 15 [] 0.2 1.2e+03 Drf_FH3 1/1 302 494 .. 1 234 [] 230.5 2.3e-65 FH2 1/1 637 1009 .. 1 413 [] 528.3 5.6e-155 Drf_DAD 2/2 1060 1074 .. 1 15 [] 31.6 1.9e-05 Alignments of top-scoring domains: Drf_GBD: domain 1 of 1, from 114 to 298: score 257.6, E = 1.7e-73 *->lqmpsdeeLVdelFeellkedriflnLpedKreaLrnlsaekKWeli ++ +++ e+ ++lFe+++ ed +nL+edK+++Lr++++ +K+e++ mKIAA4117 114 PKALPESEV-LKLFEKMM-ED---MNLNEDKKAPLREKDFGIKKEMV 155 cqylskndkgkkkksskselnekaiaSdileilteesspqeYiekLrsga +qy+++ +k+++ +ss+++ spqe++++L++g mKIAA4117 156 MQYINTASKTGSLRSSRQI------------------SPQEFLHELKMGY 187 lsekllscsssskehsaknkslgslSpstkvvddgLkvaelesLrVaLrt ++e+l ++ lesLrV+L++ mKIAA4117 188 TDERLFTY--------------------------------LESLRVSLTS 205 npvsWVkaFgklgNkGliaLlkiLqtllkkkiyelestdsvesgvekskk pvsWV++Fg++ Gl++Ll+iL++l++ i+e mKIAA4117 206 HPVSWVQSFGHE---GLGLLLDILEKLINGQIQE---------------- 236 dspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaqqlqkqqlq mKIAA4117 - -------------------------------------------------- - qsttliektlpsidkklqfecirClKaLMNnklGlkrvLsheesividtl +++kk q+++i+Cl+aLMN+++Gl+r++s+++s + +l mKIAA4117 237 -----------KVVKKTQHKVIQCLRALMNTQYGLERIMSDKRS--LSLL 273 vlsLdssnlktrklaleLLaalClv<-* ++++d++++ ++ ++++LL+a+C+v mKIAA4117 274 AKAMDPRQPAMMADVVKLLSAVCIV 298 Drf_DAD: domain 1 of 2, from 302 to 316: score 0.2, E = 1.2e+03 *->GvmDsLLEALqsGaA<-* +++++LEAL s mKIAA4117 302 SILEEVLEALTSAGE 316 Drf_FH3: domain 1 of 1, from 302 to 494: score 230.5, E = 2.3e-65 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva ++ e vlea++ e+ + RF ++v++l + s++++va mKIAA4117 302 SILEEVLEALTSAGEE-RKIDRFFSIVEGL-------RHNSVNLQVA 340 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +mq+INalv +sp+dl+fRlhLR+Ef+++GL+e+l +lk++ ++d L mKIAA4117 341 CMQLINALV---TSPDDLDFRLHLRNEFMRCGLKEILPNLKGI--KNDGL 385 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv d+q+k+F+e+ +e edl e+ +rle+++ mKIAA4117 386 DIQLKVFDEH----KE------------EDLNEFFHRLEDIR-------A 412 eldslssvaellsnllkltgaedlllSilQhllllakdseeskLtsyikl eld +s+v+ +l++ +k t+ae ++lSilQhlll+++d + ++y+kl mKIAA4117 413 ELDEASDVYSMLWDTVKETRAEGHFLSILQHLLLIRND-RFIR-EQYFKL 460 leeivqqIllhrtkpsdpkfeqklqenvdegterlld<-* ++e+v+qI+lhr + dp+f ++++ ++d +++++d mKIAA4117 461 IDECVSQIVLHRD-GTDPDFTYRKRLDLD--LSQFVD 494 FH2: domain 1 of 1, from 637 to 1009: score 528.3, E = 5.6e-155 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse kke kp+ ++++L+W K+ p++++++++W k++e+++e+ + l + mKIAA4117 637 KKEFKPEISMRRLNWLKIGPNEMSENCFWIKVNENKYEN--RDLLCK 681 lEelFsakakkkkekksseksskskkkkkeisvLDpkrsQNiaIlLrkls lE+ F ++k+k++ + + +++ kk+ ke+++LDpk +QN++I+L+++ mKIAA4117 682 LENTFCCQEKEKRNTNDFDEKKVIKKRMKELKFLDPKIAQNLSIFLSSF- 730 klppeeivqAilemDedvLgvvlflkemldllenLlkmaPtkeElkklqe ++p+e i+ +ile+De +L+ + +++nL+k++P++e lk l mKIAA4117 731 RVPYEKIRTMILEVDETQLS--------ESMIQNLIKHLPDEEQLKSL-- 770 keykgdekspskLgraEqqFLlelskliprleeRlrallFkstFeeevee ++++ d +++L+++E qF +s+ ++rl++Rl a+lFk++Fee+v++ mKIAA4117 771 SQFRSD---YNSLCEPE-QFAVVMSN-VKRLRPRLSAILFKLQFEEQVNN 815 lkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAkGFkL +kp+++++ +A+ee+++S+ f+klLel+L +GNyMN+G+r+ ++ +GF L mKIAA4117 816 IKPDIMAVSTACEEIKKSKGFSKLLELVLLMGNYMNAGSRN-AQTFGFDL 864 ssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpelldfs ssL+KL+d+Ks+ d+ktTLLHflv+++ee k+ ++l+f mKIAA4117 865 SSLCKLKDTKSA-DQKTTLLHFLVDVCEE------------KHADILHFV 901 seLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsdeepsd ++L+h++kA++v++e Le++vk++ ++l++lek+le+++ +e+ +d mKIAA4117 902 DDLAHLDKASRVSVEMLEKNVKQMGRQLQQLEKNLETFPP----PEDLHD 947 kFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedpkdets kFv++m++F+ +A+e+++kL ll +++ l+ +++ Y+ d k ++s mKIAA4117 948 KFVIKMSSFVISANEQYEKLSTLLGSMTQLYQSVMGYY---AVDMK-KVS 993 peeFFkilrdFlnefk<-* eeFF++l++F++ f mKIAA4117 994 VEEFFNDLNNFRTSFM 1009 Drf_DAD: domain 2 of 2, from 1060 to 1074: score 31.6, E = 1.9e-05 *->GvmDsLLEALqsGaA<-* GvmDsLLEALqsGaA mKIAA4117 1060 GVMDSLLEALQSGAA 1074 //