hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj08213/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4116  ( 979 res)   mfj08213

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RING     Ring finger                                     29.3    0.00053   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1     926   964 ..     1    23 []    29.3  0.00053

Alignments of top-scoring domains:
RING: domain 1 of 1, from 926 to 964: score 29.3, E = 0.00053
                   *->CpICle....pvvlpCgH.FCr.Ci..........CPlC<-*
                      Cp C  +++++v+++C H FC++C++++ ++++++CP C   
   mKIAA4116   926    CPCCNMrkkdAVLTKCFHvFCFeCVktrydtrqrkCPKC    964  

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