hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj08213/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4116  ( 979 res)   mfj08213

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
zf-C3HC4      Zinc finger, C3HC4 type (RING finger)      32.0    1.4e-05   1
K-box         K-box region                              -21.1       0.17   1
Borrelia_orfA Borrelia ORF-A                            -95.1       0.44   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
K-box           1/1     263   361 ..     1   103 []   -21.1     0.17
Borrelia_orfA   1/1     421   725 ..     1   345 []   -95.1     0.44
zf-C3HC4        1/1     926   964 ..     1    50 []    32.0  1.4e-05

Alignments of top-scoring domains:
K-box: domain 1 of 1, from 263 to 361: score -21.1, E = 0.17
                   *->yqkssgnsslwesntqnwqqEaaKLkaqienLQnnrnqRhllGEdLg
                        ++++  s+ es    +q +++K++++ + L      Rhl  E L+
   mKIAA4116   263    VETAESRVSVLESMIDDLQWDIDKIRKREQRLN-----RHLA-EVLE 303  

                   sLslKELqqLEqq..LEkgLkhIRsrKnqllldqieelqkKErelqeeNk
                     + K  +     ++L  g + I +rK + + +++ee +   ++ + e +
   mKIAA4116   304 RVNSKGYKVYGAGssLYGGTITINARKFEEMNAELEENKELAQNRHCELE 353  

                   aLrkkiee<-*
                    Lr+ +ee   
   mKIAA4116   354 KLRQDFEE    361  

Borrelia_orfA: domain 1 of 1, from 421 to 725: score -95.1, E = 0.44
                   *->mknintnniekkntnkenkkqhKlivlistLnyiNkkfkKkYtqsni
                        +  +  ie++    + k++   i l  tL+ ++k+++        
   mKIAA4116   421    THQRQVELIERDEVSLHKKLRTEVIQLEDTLAQVRKEYEM------L 461  

                   lYyfnsnLkrngqkevklktLqNylykLeKelkvttn.....yykhLgkN
                   ++ f   L  n+q+  + + ++ +++ L    +   +++  +y ++L++ 
   mKIAA4116   462 RIEFEQTLAANEQAGPINREMRHLISSLQN-HNHQLKgevlrYKRKLREA 510  

                   lgteiyykLnyskkkcykkintqyFKeKktkrfksrvasylkdknlknss
                      + +  L+    ++ + + t   K+  t+ ++ + +    +  lk+s+
   mKIAA4116   511 QSDLNKTRLRSGSALLQSQSSTEDPKDEPTELKQDSEDLATHSSALKASQ 560  

                   vklveclnNknnneyiKeerei.kikeiekyqikkYinkcNfnsikeifS
                    ++v++   +++ e    e+e ++  e ek++ +   +   ++s ke  S
   mKIAA4116   561 EDEVKSKRDEEERERERREKEReREREREKEKEREREKQKLKESEKERDS 610  

                   iiln.lklkKdikIkilKiikkiEikLKnknkhisvvsnkskiKnkqkkl
                     + ++ + +d  +k+  iik+ +i LK             k+++ qk+ 
   mKIAA4116   611 VKDKeKGKHDDGRKKEAEIIKQLKIELK-------------KAQESQKEM 647  

                   KkiLentKdfkmlekkgYkkkqiekffkkiyenYKnKphFIiEefKyktD
                   K +L  ++                    ++ ++   K   ++ e+K k  
   mKIAA4116   648 KLLLDMYR--------------------SAPKEQRDKVQLMAAEKKSKAE 677  

                   ldklikKlKksierKKeniqknykniktNiFlnIlieqlkK.kilikiLk
                   l+ l  +lK+          k++k +k+    +  +++++  ++ i+ L+
   mKIAA4116   678 LEDLRQRLKDLED-------KEKKENKKMAD-EDALRKIRAvEEQIEYLQ 719  

                   piiKky<-*
                   +++      
   mKIAA4116   720 KKLAMA    725  

zf-C3HC4: domain 1 of 1, from 926 to 964: score 32.0, E = 1.4e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ C +  k+++     ++ C H      fC++C+++ ++  ++++C
   mKIAA4116   926    CPCCNMRKKDAV-----LTKCFHV-----FCFECVKTRYD-TRQRKC 961  

                   plC<-*
                   p C   
   mKIAA4116   962 PKC    964  

//