hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj06256/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4115  ( 505 res)   msj06256

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           60.3    2.5e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/1     379   449 ..     1   121 []    60.3  2.5e-13

Alignments of top-scoring domains:
RRM: domain 1 of 1, from 379 to 449: score 60.3, E = 2.5e-13
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       lf+gNL  p +v++++L+++F              + fG+vv+ ri
   mKIAA4115   379    QLFIGNL--PHEVDKSELKDFF--------------QNFGNVVELRI 409  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                                              Gk  +f+FV F+d e ++k+  +
   mKIAA4115   410 NSG------------------------GKLPNFGFVVFDDSEPVQKV--L 433  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++       ++ +g  +   l+Ve   
   mKIAA4115   434 SNRP----IMF-RGAVR---LNVE    449  

//