hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj06256/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4115  ( 505 res)   msj06256

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
NTF2     Nuclear transport factor 2 (NTF2) domain       154.6    1.7e-42   1
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     56.3    6.8e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NTF2       1/1      51   173 ..     1   133 []   154.6  1.7e-42
RRM_1      1/1     380   440 ..     1    74 []    56.3  6.8e-13

Alignments of top-scoring domains:
NTF2: domain 1 of 1, from 51 to 173: score 154.6, E = 1.7e-42
                   *->vakaFvqqYYaaldagdpeglaalYydadaSvltfpGqstddGt.mv
                      v+++Fv+qYY++l++  p+ l+++Y  + +S + ++G ++ +G++++
   mKIAA4115    51    VGREFVRQYYTLLNQ-APDMLHRFY--GKNSSYAHGGLDS-NGKpAD 93   

                   pvsGleaIneffdsLpftkilkhkittvDsqptedgaslsdgvlvmVtGe
                    v+G+++I+++++s +ft++ + ki++vD++     a+l+dgv+v+V+G 
   mKIAA4115    94 AVYGQKEIHRKVMSQNFTNC-HTKIRHVDAH-----ATLNDGVVVQVMGL 137  

                   ltvdgfpprrrFsQtFfLapqeqanggyfvlnDifRf<-*
                   l ++++   rrF+QtF+Lap++++ ++++v+nDifR+   
   mKIAA4115   138 LSNNNQA-LRRFMQTFVLAPEGSVANKFYVHNDIFRY    173  

RRM_1: domain 1 of 1, from 380 to 440: score 56.3, E = 6.8e-13
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+gNLp+++++++Lkd+F++fG +++ +i        g+  +f+FV
   mKIAA4115   380    LFIGNLPHEVDKSELKDFFQNFGNVVELRINSG-----GKLPNFGFV 421  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+d+e ++k+l+        +r++     
   mKIAA4115   422 VFDDSEPVQKVLS--------NRPIMF    440  

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