hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00134/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4113  ( 618 res)   mpf00134

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ILWEQ    I/LWEQ domain                                  412.9   1.8e-119   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ILWEQ      1/1     395   593 ..     1   207 []   412.9 1.8e-119

Alignments of top-scoring domains:
ILWEQ: domain 1 of 1, from 395 to 593: score 412.9, E = 1.8e-119
                   *->gveleVdEsILeaAkaItkAiaaLVkAAtnaQrEIVaqGrggaspae
                      gv+leV+E+IL +++++++Ai +LV A++++Q+EIV++Grg+asp+e
   mKIAA4113   395    GVKLEVNERILGSCTSLMQAIKVLVVASKDLQKEIVESGRGTASPKE 441  

                   fYkKnsrWTEGLISAAKAVAaAtnvLveaAdgvvqGkgseEeLIVAakeV
                   fY+KnsrWTEGLISA+KAV+++++++v+aAd vvqGkg++EeL+V+++e+
   mKIAA4113   442 FYAKNSRWTEGLISASKAVGWGATIMVDAADLVVQGKGKFEELMVCSREI 491  

                   AASTAQLVaASRVKAdkdSqSqAaqdrLeaAskaVtnAtanLVaavksva
                   AASTAQLVaAS+VKA+k S    ++ +L++As+ V++Ata++Va++ s++
   mKIAA4113   492 AASTAQLVAASKVKANKGSL---NLTQLQQASRGVNQATAAVVASTISGK 538  

                   ieddeetieqeqelDfskLslhegKtqEMEqQVeILKLEkeLeaARkkLa
                   ++     ie+++++Dfs+++l+++K+qEM++QV++L+LE++L+++R+kL+
   mKIAA4113   539 SQ-----IEETDSMDFSSMTLTQIKRQEMDSQVRVLELENDLQKERQKLG 583  

                   eiRKqeYkla<-*
                   e+RK++Y+la   
   mKIAA4113   584 ELRKKHYELA    593  

//