hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00134/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4113  ( 618 res)   mpf00134

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
I_LWEQ   I/LWEQ domain                                  411.7     7e-120   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
I_LWEQ     1/1     400   593 ..     1   202 []   411.7   7e-120

Alignments of top-scoring domains:
I_LWEQ: domain 1 of 1, from 400 to 593: score 411.7, E = 7e-120
                   *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn
                      Vne+IL++++++m+Ai +LV+A++++Q+Eiv++Grg+asp+efY+kn
   mKIAA4113   400    VNERILGSCTSLMQAIKVLVVASKDLQKEIVESGRGTASPKEFYAKN 446  

                   srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA
                   srWTEGLISA+KaVg+++t +v+AAd vV+    Gkg+fEeL+V+++e+A
   mKIAA4113   447 SRWTEGLISASKAVGWGATIMVDAADLVVQ----GKGKFEELMVCSREIA 492  

                   ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai
                   ASTAQLVaAS+VKA  +k S + l +Lq+A+++Vn+Ata++Va+++sg++
   mKIAA4113   493 ASTAQLVAASKVKA--NKGSLN-LTQLQQASRGVNQATAAVVASTISGKS 539  

                   fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq
                   + ie+++++dfss++l+++K+qEm++Qv++L+LE++L+++R+kL+elRK+
   mKIAA4113   540 Q-IEETDSMDFSSMTLTQIKRQEMDSQVRVLELENDLQKERQKLGELRKK 588  

                   hYela<-*
                   hYela   
   mKIAA4113   589 HYELA    593  

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