hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj10349/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4112  ( 1261 res)   mfj10349

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                           128.7    6.3e-34   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/3     899   968 ..     1    67 []    48.3    1e-09
SAM        2/3    1021  1088 ..     1    67 []    36.9  2.8e-06
SAM        3/3    1109  1181 ..     1    67 []    44.9  1.1e-08

Alignments of top-scoring domains:
SAM: domain 1 of 3, from 899 to 968: score 48.3, E = 1e-09
                   *->vs.wspesVaeWLes.igleq.YadnFrkngidgeelllltseedLk
                      + +w+ ++V +WLe  +g++  Y+ + r+n  +g+++ +l++ e   
   mKIAA4112   899    FAqWDGPTVVAWLELwLGMPAwYVAACRANVKSGAIMSALSDTEIQR 945  

                   elGitllGhRkkIlsaiqklkeq<-*
                   e+Gi+++ hR+k+  aiq++ +    
   mKIAA4112   946 EIGISNPLHRLKLRLAIQEMVSL    968  

SAM: domain 2 of 3, from 1021 to 1088: score 36.9, E = 2.8e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       + +++    eWL s+gl+qY++ F+++ +d ++l +lt  ++  +l
   mKIAA4112  1021    GDmNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHL 1067 

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ +  hR  ++++i +lk     
   mKIAA4112  1068 KMVDSFHRTSLQYGIMCLKRL    1088 

SAM: domain 3 of 3, from 1109 to 1181: score 44.9, E = 1.1e-08
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v  ws++ V++W+++igl +Ya+n ++ g++g++ +l ++ + +s++
   mKIAA4112  1109    VLvWSNDRVIRWIQAIGLREYANNILESGVHGSLIALDEnfdysSLA 1155 

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                   +L+++  +++++R+ + ++ + l++    
   mKIAA4112  1156 LLLQIPTQNTQARQILEREYNNLLAL    1181 

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