hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj10349/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4112 ( 1261 res) mfj10349 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SAM_1 SAM domain (Sterile alpha motif) 79.7 6e-20 2 SAM_2 SAM domain (Sterile alpha motif) 61.2 2.3e-14 3 Vicilin_N Vicilin N terminal region -76.2 0.92 1 GBP_C Guanylate-binding protein, C-terminal domai -152.1 0.72 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Vicilin_N 1/1 403 525 .. 1 183 [] -76.2 0.92 GBP_C 1/1 251 530 .. 1 305 [] -152.1 0.72 SAM_1 1/2 900 966 .. 1 66 [] 23.1 0.0018 SAM_2 1/3 899 968 .. 1 72 [] 13.2 0.65 SAM_1 2/2 1022 1086 .. 1 66 [] 56.6 5.3e-13 SAM_2 2/3 1025 1088 .. 1 72 [] 15.1 0.43 SAM_2 3/3 1109 1181 .. 1 72 [] 34.3 2.8e-06 Alignments of top-scoring domains: Vicilin_N: domain 1 of 1, from 403 to 525: score -76.2, E = 0.92 *->pGRrnYeDDPqqrYEqCqRRCesetrGqrEQqqCEeRCkeqykEeqq R+ e P E qR + ++r E+ + e++ mKIAA4112 403 TMRKA-ETLPEVEAELAQRIAALTKAEERHGNIEERMRHLEGQLEEK 448 qqRqReEDPQrrYeeCqqrCqqeETEeRhrptCqQrCerrYEkeqqqQQK q ++Q r +q E + mKIAA4112 449 NQ-----ELQ--------RARQRE----------------------K--- 460 RYEEQQREDEEKYEERmKEEDNKR..DPqqRqyqeCQqRCqqQEQrPrrq m EE NKR +D +R e R q r mKIAA4112 461 ----------------MNEEHNKRlsDTVDRLLTESNERLQLHL-KERMA 493 QQCqReCREQYqEqqerGeeenknPQWReeeeersEEG<-* + Q E + r e+ + +er E+ mKIAA4112 494 ALEEKNVLIQESE-NFRKNLEES-----LHDKERLAEE 525 GBP_C: domain 1 of 1, from 251 to 530: score -152.1, E = 0.72 *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk G +V rL ++Gs+ +++ + ++ q mKIAA4112 251 AGQKVHEKRL-----------SNGSIDSTDDTSQIVE-------LQE 279 AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ + M+Q ++ e l +L E+EA ++ + +k + + mKIAA4112 280 LLEKQNYEMAQ-MK---ERLTALSSRVGEVEQEAETA-RKDLIKTEEMNT 324 kFqrkLvaqLeaakedFcrkNeea....SssrCqalLedLskdLeelikq k+qr+ + ++ + + r +++ S +r ++ + d+ +Le ++ mKIAA4112 325 KYQRDIREAMAQKEDMEERITTLEkrylSAQRESTSIHDMNDKLENELAN 374 GdfsvpGGh...rLfleavqeieakYkQvPrKGvkAsevLkefLqDILV. + + + +++r + e+++ e+k +Q+ rK + ev e q I mKIAA4112 375 KEAILRQMEeknRQLQERLELAEQKLQQTMRKAETLPEVEAELAQRIAAl 424 ....HskedlaDsLlqtdqaLtlkekaiEaerNikkEaAEkaekllrEkQ ++ + ++++++ + + +L+ ek +E r A+ +ek+++E mKIAA4112 425 tkaeERHGNIEERMRHLEGQLE--EKNQELQR------ARQREKMNEEHN 466 KrhEeamEakEksyqEhkkqLtekmEserkqLmaEqnrmLEhklkeqeeL Kr + + ++ E ++L+ + +er ++E n ++ ++ L mKIAA4112 467 KR---LSDTVDRLLTESNERLQLHL-KERMAALEEKNVLIQESENFRKNL 512 leeGFknestllekeIselr<-* e +e +l eI++lr mKIAA4112 513 EESLHDKE--RLAEEIEKLR 530 SAM_1: domain 1 of 2, from 900 to 966: score 23.1, E = 0.0018 *->dgwsvesVgeWLe.sigllgq.YidnFlaagyidgdtllqlteeDLe +w+ +V WLe +g+ + Y+ +a+ ++g + l+ +++ mKIAA4112 900 AQWDGPTVVAWLElWLGM-PAwYVAAC-RANVKSGAIMSALSDTEIQ 944 d.lGvtllGHrkkIlssIqgLk<-* +++G+ ++ Hr+k+ ++Iq + mKIAA4112 945 ReIGISNPLHRLKLRLAIQEMV 966 SAM_2: domain 1 of 3, from 899 to 968: score 13.2, E = 0.65 *->veswslesvaeWLe.siglegqYkdnFsdqgitglellllrlteedL +w+ ++v +WLe +g+ + + ++++ ++ ++ l+ + mKIAA4112 899 FAQWDGPTVVAWLElWLGM-PAWYVAACRANVKSGAIM-SALSDTEI 943 aklalGitsvghRkkilskiqelkqq<-* + ++Gi+++ hR+k+ +iqe+ mKIAA4112 944 -QREIGISNPLHRLKLRLAIQEMVSL 968 SAM_1: domain 2 of 2, from 1022 to 1086: score 56.6, E = 5.3e-13 *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLed. d ++ + eWL s+gl +qY++ F + ++d ++l +lt+ DL+ + mKIAA4112 1022 DMNHEWIGNEWLPSLGL-PQYRSYF-MECLVDARMLDHLTKKDLRVh 1066 lGvtllGHrkkIlssIqgLk<-* l+++ Hr ++++I Lk mKIAA4112 1067 LKMVDSFHRTSLQYGIMCLK 1086 SAM_2: domain 2 of 3, from 1025 to 1088: score 15.1, E = 0.43 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa e + eWL s+gl +qY+ +F+++ ++ ++l +lt dL mKIAA4112 1025 HEWIGN----EWLPSLGL-PQYRSYFMECLVDA-RML-DHLTKKDL- 1063 klalGitsvghRkkilskiqelkqq<-* +l++ + hR + +i +lk mKIAA4112 1064 RVHLKMVDSFHRTSLQYGIMCLKRL 1088 SAM_2: domain 3 of 3, from 1109 to 1181: score 34.3, E = 2.8e-06 *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL v +ws+++v W ++igl ++Y+ n ++ g++g + l+++++ + L mKIAA4112 1109 VLVWSNDRVIRWIQAIGL-REYANNILESGVHGSLIALdENFDYSSL 1154 a.klalGitsvghRkkilskiqelkqq<-* a +l+++ ++++ R+ + ++ ++l+ mKIAA4112 1155 AlLLQIPTQNTQARQILEREYNNLLAL 1181 //