hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mid/mid39041/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4111 ( 619 res) mid39041 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 289.9 1.9e-82 19 LRR_PS Leucine-rich repeat, plant-specific subfamil 55.6 6.6e-12 12 LRRNT Leucine rich repeat N-terminal domain 47.0 2.4e-09 1 LRRCT Leucine rich repeat C-terminal domain 41.4 1.2e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRRNT 1/1 56 94 .. 1 38 [] 47.0 2.4e-09 LRR_TYP 1/19 93 112 .. 1 24 [] 11.0 19 LRR_TYP 2/19 113 136 .. 1 24 [] 11.5 17 LRR_PS 1/12 137 159 .. 1 24 [] 5.0 2.7e+02 LRR_TYP 3/19 137 160 .. 1 24 [] 25.4 0.0081 LRR_TYP 4/19 161 184 .. 1 24 [] 12.6 12 LRR_PS 2/12 185 207 .. 1 24 [] 13.0 24 LRR_TYP 5/19 185 208 .. 1 24 [] 24.7 0.013 LRR_TYP 6/19 209 232 .. 1 24 [] 20.4 0.25 LRR_PS 3/12 209 232 .. 1 24 [] 2.5 5.6e+02 LRR_PS 4/12 233 255 .. 1 24 [] 1.9 6.8e+02 LRR_TYP 7/19 233 256 .. 1 24 [] 26.9 0.0028 LRR_TYP 8/19 257 280 .. 1 24 [] 27.3 0.0022 LRR_PS 5/12 257 280 .. 1 24 [] 6.9 1.5e+02 LRR_PS 6/12 281 304 .. 1 24 [] 10.8 47 LRR_TYP 9/19 281 304 .. 1 24 [] 19.0 0.66 LRR_PS 7/12 305 328 .. 1 24 [] 0.0 1.2e+03 LRR_TYP 10/19 305 328 .. 1 24 [] 22.2 0.073 LRR_TYP 11/19 329 352 .. 1 24 [] 25.5 0.0074 LRR_PS 8/12 353 375 .. 1 24 [] 0.2 1.1e+03 LRR_TYP 12/19 353 376 .. 1 24 [] 23.7 0.026 LRR_TYP 13/19 377 400 .. 1 24 [] 20.7 0.21 LRR_TYP 14/19 401 424 .. 1 24 [] 7.9 45 LRR_PS 9/12 425 447 .. 1 24 [] 5.8 2.1e+02 LRR_TYP 15/19 425 448 .. 1 24 [] 20.1 0.31 LRR_PS 10/12 449 471 .. 1 24 [] 15.7 6.4 LRR_TYP 16/19 449 472 .. 1 24 [] 31.4 0.00012 LRR_PS 11/12 473 495 .. 1 24 [] 7.6 1.2e+02 LRR_TYP 17/19 473 496 .. 1 24 [] 25.4 0.0079 LRR_TYP 18/19 497 520 .. 1 24 [] 4.2 1.3e+02 LRR_PS 12/12 521 543 .. 1 24 [] 5.1 2.6e+02 LRR_TYP 19/19 521 546 .. 1 24 [] 9.2 32 LRRCT 1/1 551 598 .. 1 55 [] 41.4 1.2e-07 Alignments of top-scoring domains: LRRNT: domain 1 of 1, from 56 to 94: score 47.0, E = 2.4e-09 *->qCPapCtCsp...dfgtaVdCsgrgLttlevPldlPadttl<-* qCP+ CtCs+++ +++++V+Cs+r+Lt ++P ++P t++ mKIAA4111 56 QCPVTCTCSYddyTDELSVFCSSRNLT--QLPDSIPVSTRA 94 LRR_TYP: domain 1 of 19, from 93 to 112: score 11.0, E = 19 *->LpnLreLdLsnNqLtsLPpgaFqg<-* r L L++N+L+s+P+ aFq+ mKIAA4111 93 ----RALWLDGNNLSSIPSAAFQN 112 LRR_TYP: domain 2 of 19, from 113 to 136: score 11.5, E = 17 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L L+L++ L+sL p+a+ g mKIAA4111 113 LSSLDFLNLQGSWLRSLEPQALLG 136 LRR_PS: domain 1 of 12, from 137 to 159: score 5.0, E = 2.7e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L +L+L N L ++ + l++ mKIAA4111 137 LQNLYHLHLERNLLR-SLAAGLFR 159 LRR_TYP: domain 3 of 19, from 137 to 160: score 25.4, E = 0.0081 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL +L+L++N L+sL +g+F++ mKIAA4111 137 LQNLYHLHLERNLLRSLAAGLFRH 160 LRR_TYP: domain 4 of 19, from 161 to 184: score 12.6, E = 12 *->LpnLreLdLsnNqLtsLPpgaFqg<-* p+L +L+L+nN L +L +g+F+g mKIAA4111 161 TPSLASLSLGNNLLGRLEEGLFRG 184 LRR_PS: domain 2 of 12, from 185 to 207: score 13.0, E = 24 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L L+L +N+L +P++ ++ mKIAA4111 185 LSHLWDLNLGWNSLV-VLPDTVFQ 207 LRR_TYP: domain 5 of 19, from 185 to 208: score 24.7, E = 0.013 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L L+L++N L LP+ +Fqg mKIAA4111 185 LSHLWDLNLGWNSLVVLPDTVFQG 208 LRR_TYP: domain 6 of 19, from 209 to 232: score 20.4, E = 0.25 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL eL L +N+Lt L p ++ g mKIAA4111 209 LGNLHELVLAGNKLTYLQPALLCG 232 LRR_PS: domain 3 of 12, from 209 to 232: score 2.5, E = 5.6e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L +L L++N+L+ P+ l+ mKIAA4111 209 LGNLHELVLAGNKLTYLQPALLCG 232 [output cut off at A = 10 top alignments] //