hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj68342/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4107  ( 1176 res)   mfj68342

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    274.6    7.8e-78   1
TyrKc    Tyrosine kinase, catalytic domain              -85.0      7e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TyrKc      1/1     206   492 ..     1   280 []   -85.0    7e-06
S_TKc      1/1     206   534 ..     1   231 []   274.6  7.8e-78

Alignments of top-scoring domains:
TyrKc: domain 1 of 1, from 206 to 492: score -85.0, E = 7e-06
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda..keeFlrEak
                       + ++ LG+G FG+V+k+  +++++ VA+K Lk++ +  +    E +
   mKIAA4107   206    YEVLEFLGRGTFGQVVKCWKRgtnEIVAIKILKNHPsyARQGQIEVS 252  

                   iMkklGgkHp.....NiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   i+ +l  + ++ ++ N V+ + +  ++          ++v+E  e  +L 
   mKIAA4107   253 ILARL--STEsaddyNFVRAYECFQHK-------NHTCLVFEMLEQ-NLY 292  

                   dyLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgen
                   d+L+ n+  +l+l+       Q+A     L s +++H DL   N+++ ++
   mKIAA4107   293 DFLKQNKFSpLPLKYIRPVLQQVATALMKLKSLGLIHADLKPENIMLVDP 342  

                   k....vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP
                    +++ +vK+ DFG +  +     +    ++Y      +++        AP
   mKIAA4107   343 SrqpyRVKVIDFGSASHVSKA-VC----STYL-----QSR-----YYRAP 377  

                   EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk
                   E +    F ++ D WS G ++ E+f lG + Ypg      s ++ ++y+ 
   mKIAA4107   378 EIILGLPFCEAIDMWSLGCVIAELF-LGWPLYPG-----ASEYDQIRYIS 421  

                   kGyRlpkPendlpiS...............................svtC
                   +   lp       +S ++++++  +++++++ +  + +++++++ +  + 
   mKIAA4107   422 QTQGLPAEYL---LSagtkttrffnrdtdspyplwrlktpddheaeTGIK 468  

                   PdelYdlMlqCWaedPedRPtFsel..verl<-*
                   ++e  + +  C +        +++++   +l   
   mKIAA4107   469 SKEARKYIFNCLDD-------MAQVnmTTDL    492  

S_TKc: domain 1 of 1, from 206 to 534: score 274.6, E = 7.8e-78
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik
                      Ye+l+ lG+G+FG+V ++++++t+++vAiK++k++++  ++ + E++
   mKIAA4107   206    YEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKnhpsyaRQGQIEVS 252  

                   iLkk......dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                   iL + ++++ d  N V+ y++f+++++ +lV+E++e+   +L+d+lk+++
   mKIAA4107   253 ILARlstesaDDYNFVRAYECFQHkNHTCLVFEMLEQ---NLYDFLKQNK 299  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds....
                        ++l+ + +r +++Q++ aL  L s+g iH DLKPeNi+L +++++
   mKIAA4107   300 F----SPLPLkYIRPVLQQVATALMKLKSLGLIHADLKPENIMLVDpsrq 345  

                   ..hvKlaDFGlArql.....ttfvGTpeYmAPEvl...gYgkpavDiWSl
                   + +vK++DFG+A ++++   +t+  +++Y+APE++ + ++   a+D+WSl
   mKIAA4107   346 pyRVKVIDFGSASHVskavcSTYLQSRYYRAPEIIlglPFCE-AIDMWSL 394  

                   GcilyElltGkpPFp..qldlifkkig.......................
                   Gc+++El+ G p++p+  ++  ++ i  + + + ++  + ++++++  ++
   mKIAA4107   395 GCVIAELFLGWPLYPgaSEYDQIRYISqtqglpaeyllsagtkttrffnr 444  

                   ..................................................
                   +++++++ ++ +++++++ +++ ++++ +++  +  ++    + +++ ++
   mKIAA4107   445 dtdspyplwrlktpddheaetgikskearkyifnclddmaqvnmttdleg 494  

                   .........SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   ++   ++ + +e++dL+kk+L+ d +kR t  e L+       HPf+   
   mKIAA4107   495 sdmlvekadRREFIDLLKKMLTIDADKRVTPiETLN-------HPFV    534  

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