hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid05034/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4106  ( 748 res)   mid05034

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CULLIN   Cullin                                         296.6    1.8e-84   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CULLIN     1/1     419   571 ..     1   159 []   296.6  1.8e-84

Alignments of top-scoring domains:
CULLIN: domain 1 of 1, from 419 to 571: score 296.6, E = 1.8e-84
                   *->dkvlvlFkYiedKDVFekyYkkhLAKRLllnrSaSdDaEenmitkLK
                      ++++++FkYi+dKDVF+k+Y ++LAKRL++++S+S+D+Ee+mi+kLK
   mKIAA4106   419    TSFITVFKYIDDKDVFQKFYARMLAKRLIHGLSMSMDSEEAMINKLK 465  

                   qecGyPaefTsKLegMFrDislSkdltqsFkdylannpgnaskksiDlsn
                   q+cGy  efTsKL++M++D+s+S dl+++F+++  n+   + +++i ++ 
   mKIAA4106   466 QACGY--EFTSKLHRMYTDMSVSADLNNKFNNFIRNQDT-VIDLGISFQ- 511  

                   vrVLtsgyWPtystekikveinLPqeLskaleeFeeFYlakhsGRkLtWl
                   ++VL++g+WP+++++  ++++ +PqeL+k++++Fe FY++++sGRkLtWl
   mKIAA4106   512 IYVLQAGAWPLTQAP--SSTFAIPQELEKSVQMFELFYSQHFSGRKLTWL 559  

                   hslgsgevkanf<-*
                   h+l++gevk+n+   
   mKIAA4106   560 HYLCTGEVKMNY    571  

//