hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid05034/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4106  ( 748 res)   mid05034

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cullin   Cullin family                                  947.5   3.4e-281   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cullin     1/1      17   648 ..     1   656 []   947.5 3.4e-281

Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 17 to 648: score 947.5, E = 3.4e-281
                   *->WekLrdaidqiltnlknvsplsyeeLYtaVYniCtstsavphklgek
                      W+kL+ +i+++  +l+ v++ ++++ ++++Y +C++    p++lge+
   mKIAA4106    17    WNKLLTTIKAVV-MLEYVERATWNDRFSDIYALCVA---YPEPLGER 59   

                   LYnrLkeyleeyvkalrkslleisddenlLkeyikeWkdfstsmkmindi
                   LY ++k +le++v++l k++le  ++e+ L +y+++W+++s+++++++++
   mKIAA4106    60 LYAETKIFLESHVRHLYKRVLE--SEEQVLVMYHRYWEEYSKGADYMDCL 107  

                   fmYLdRyyvkrn............i.dgkkevyeiyeLgLdiWreelfdn
                   ++YL+++y+k+n+ ++ + + + +  d++++++ei+eL+Ld+Wr++++++
   mKIAA4106   108 YRYLNTQYIKKNklteadiqygygGvDMNEPLMEIGELALDMWRKLMVEP 157  

                   ikdrlidalLdlIekeRkGeaidr.liknvvdmlvsLgldekDmkkqklk
                   +++ li++lL+ I+++R Ge++++++i++v++++v++++ +k++   +lk
   mKIAA4106   158 LQNILIRMLLREIKNDRGGEDPNQkVIHGVINSFVHVEQYKKKF---PLK 204  

                   vYkedFEkpFLeaTseFYkkEsskfLqensvseYlkkvEkrLeeEeeRvr
                   +Y+  F  pFL++T+e+Yk+E+s++Lqe+++s+Y++kv  rL++Ee R+r
   mKIAA4106   205 FYQGIFVSPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKDEEIRCR 254  

                   lYLhsstekklievvekvLIekHlefLlmehsefq.LldnnkleDLrrMY
                   +YLh+s+ +k+i+ +++ ++++Hl+fL   hse+++++ +++ +D+++MY
   mKIAA4106   255 KYLHPSSYTKVIHECQQRMVADHLQFL---HSECHsIIQQERKNDMANMY 301  

                   rLlsRvpnGLeplrkilekhvkkeGlalvsklaaetdpkdyVeeLLelhd
                   +Ll+ v+ GL+++++ l+kh++ eGl + s+l++e +p+ +Ve++Le+h 
   mKIAA4106   302 VLLRAVSSGLPHMIEELQKHIHDEGLRATSNLTQEHMPTLFVESVLEVHG 351  

                   kydslvneaFnnDplFlnaLdkAfesfiNsnvvtkaskspELLAkYcDdl
                   k+ +l+n++ n+D +F++aLdkA +s++N +++  ++k+pELLAkYcD+l
   mKIAA4106   352 KFVQLINTVLNGDQHFMSALDKALTSVVNYREPKSVCKAPELLAKYCDNL 401  

                   LKKgsKgleeeeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkS
                   LKK++Kg++e+e+e+kl+ +i++fkyi+dKDvF+kfY +mLAkRL++g S
   mKIAA4106   402 LKKSAKGMTENEVEDKLTSFITVFKYIDDKDVFQKFYARMLAKRLIHGLS 451  

                   asLddaEkrmiekLKqvecGyefTsKLegMfkDislSkelnnsFknhlen
                    s +d+E+ mi+kLKq +cGyefTsKL++M +D+s+S +lnn+F+n++ n
   mKIAA4106   452 MS-MDSEEAMINKLKQ-ACGYEFTSKLHRMYTDMSVSADLNNKFNNFIRN 499  

                   nndnldlkledeeneEgidlsvkvLstgfWPtlp.epsinfnLPeeleka
                   + ++ dl         gi+++++vL++g+WP+ +  +s+ f +P+elek+
   mKIAA4106   500 QDTVIDL---------GISFQIYVLQAGAWPLTQaPSST-FAIPQELEKS 539  

                   lerFeefYlkkhsgpdRkLtWlhsLGkgelkaefndgtkskyeltVstyQ
                   +++Fe fY++ +sg  RkLtWlh L++ge+k+++ +++   y+  V+tyQ
   mKIAA4106   540 VQMFELFYSQHFSG--RKLTWLHYLCTGEVKMNYLGKP---YVAMVTTYQ 584  

                   mavLLLFNdkeeltyeelqeatqipedeLrrtLqsLlkakvllllllrye
                   mavLL+FN++e+++y+elq++tq++e+eL++t++sLl++k++        
   mKIAA4106   585 MAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVKMIN------- 627  

                   tpgekspkdkeispntkfslNenft<-*
                       + +++++i+ ++ fslN+ f+   
   mKIAA4106   628 ----HDSEKEDIDAESSFSLNMSFS    648  

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