hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15134/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4104  ( 1065 res)   mbg15134

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   259.9      2e-73   1
PTB      Phosphotyrosine-binding domain, phosphotyros   115.0    8.7e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PTB        1/1     139   272 ..     1   156 []   115.0  8.7e-30
TBC        1/1     559   771 ..     1   310 []   259.9    2e-73

Alignments of top-scoring domains:
PTB: domain 1 of 1, from 139 to 272: score 115.0, E = 8.7e-30
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr...sekk
                      +++v+ +++YLG+  v ++r       ++  + + ++ lr++ + + 
   mKIAA4104   139    DSVVFNKLTYLGCASVNAPR-------SEVEALRMMSILRsqcQISL 178  

                   kpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgdgs
                   + +  +++vS ++v+l+d++t++++a++p+++I fc++++        ++
   mKIAA4104   179 DVTLSVPNVSEGTVRLLDPQTNTEIANYPIYKILFCVRGH--------DG 220  

                   tdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaigqaFq
                   t+ +++F++   + +++        f+ HVFrce  +    ++ i++ F+
   mKIAA4104   221 TPESDCFAFTESHYNAE-------LFRIHVFRCEIQE---AVSRILYSFA 260  

                   vayelklkarse<-*
                   +a+++++k++++   
   mKIAA4104   261 TAFRRSAKQTPL    272  

TBC: domain 1 of 1, from 559 to 771: score 259.9, E = 2e-73
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      vr Gvp+ lRgeVW+lL++++ +++                      
   mKIAA4104   559    VRSGVPEALRGEVWQLLAGCHNNDH---------------------- 583  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                    l ++Y+ l+++++p+d+                                
   mKIAA4104   584 -LVEKYRILITKESPQDS-------------------------------- 600  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                    +I +D++RTfp +++F++              +g+gq+sL+++ kaYs+
   mKIAA4104   601 -AITRDINRTFPAHDYFKD-------------TGGDGQDSLYKICKAYSV 636  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   y++e  +gYcQG +flaa+LLl+m   +Ee+AF ++vk+m++y+++ lf 
   mKIAA4104   637 YDEE--IGYCQGQSFLAAVLLLHM---PEEQAFSVLVKIMFDYGLRELF- 680  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                         +++  +l+  +++l++l++ey+P+Ly+H+++             
   mKIAA4104   681 ------KQNFEDLHCKFYQLERLMQEYIPDLYNHFLDI------------ 712  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                    +++++ya++WfLtlF+ ++Pl +v++i D+l++e    g  ++f++al 
   mKIAA4104   713 SLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCE----GISVIFNVALG 758  

                   iLklnedkllkld<-*
                   +Lk ++d+ll +d   
   mKIAA4104   759 LLKTSKDDLLLTD    771  

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