hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15134/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4104  ( 1065 res)   mbg15134

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                     116.9    3.8e-31   1
PID      Phosphotyrosine interaction domain (PTB/PID)     7.4    0.00048   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PID        1/1     148   269 ..     1   166 []     7.4  0.00048
TBC        1/1     559   770 ..     1   219 []   116.9  3.8e-31

Alignments of top-scoring domains:
PID: domain 1 of 1, from 148 to 269: score 7.4, E = 0.00048
                   *->FeVkYLGsvEVpeemrapskstRmqvareairrlkmavpgKkpkakk
                          YLG+  V  +             r  ++ l+m+          
   mKIAA4104   148    ----YLGCASVNAP-------------RSEVEALRMM---------- 167  

                   ikrskgstgerqagtkidL...sistdglklldekteaekevlhehplrk
                       + ++++ q   +++L+ +++s  +++lld++t   +  ++++p++k
   mKIAA4104   168 ----SILRSQCQISLDVTLsvpNVSEGTVRLLDPQT---NTEIANYPIYK 210  

                   ISFiAvggDpdVdlrtFayvrstddsliaadgatsrfaCHvFecekgkql
                   I F+  g+D +  ++ Fa+           +  ++ f+ HvF+ce     
   mKIAA4104   211 ILFCVRGHDGTPESDCFAF--------TESHYNAELFRIHVFRCEI---- 248  

                   AediaqavgqAFevaYqeflra<-*
                    ++ ++ +   F+ a+ +  +    
   mKIAA4104   249 -QEAVSRILYSFATAFRRSAKQ    269  

TBC: domain 1 of 1, from 559 to 770: score 116.9, E = 3.8e-31
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      v+ Gvp   r++VW ++ g           Y  l+ +     s+   
   mKIAA4104   559    VRSGVPEALRGEVWQLLAGCHNND-HLVEKYRILITKESPQDSA--- 601  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                    I +D++Rt +    F+    G g+ +L ++  AYs    ++gYcQG   
   mKIAA4104   602 -ITRDINRTFPAHDYFKDT-GGDGQDSLYKICKAYSVYDEEIGYCQGQSF 649  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   +aA +Ll +  EeqAF  L +++  +     +  +    +     L+  +
   mKIAA4104   650 LAAVLLLHM-PEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLERLM 698  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                    e  p LY + l   +++  ++  wfL+L++   Pl   + I D+L ++G
   mKIAA4104   699 QEYIPDLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEG 748  

                   ivllfrvaLAvLkilkeqiLda<-*
                   i + f vaL  Lk  k+++L     
   mKIAA4104   749 ISVIFNVALGLLKTSKDDLLLT    770  

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