hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06734/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4102  ( 1138 res)   mbg06734

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     60.7    1.9e-13   1
FHA      Forkhead associated domain                      43.1    3.6e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FHA        1/1     216   273 ..     1    49 []    43.1  3.6e-08
PH         1/1    1024  1123 ..     1    82 []    60.7  1.9e-13

Alignments of top-scoring domains:
FHA: domain 1 of 1, from 216 to 273: score 43.1, E = 3.6e-08
                   *->tvtiGRss....cdivlpspsiSRrHaeiv...dgd.....yliDlg
                      ++++GR+  +++ divl++ +i  +H++++++++g+++    l+++ 
   mKIAA4102   216    VTRVGREDaerrQDIVLSGHFIKEEHCIFRsdsRGGgeavvTLEPCE 262  

                   enSsNGTfVNgrrv<-*
                       + T+VNg++v   
   mKIAA4102   263 ---GADTYVNGKKV    273  

PH: domain 1 of 1, from 1024 to 1123: score 60.7, E = 1.9e-13
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                      v k+G+L+ ++++  +w kr++v+++ + + y s++++  + +++Ls
   mKIAA4102  1024    VSKKGYLHFLEphTaGWAKRFVVVRRPYAYMYNSDkdtVERFVLNLS 1070 

                   gcsvre.p..........cFeivt.drtlllqAeseeereeWvealqsai
                   +++v+ +++     + +++F ++t++r +llqA+s++++++W+ a++ ++
   mKIAA4102  1071 TAQVEYsEdqqamlktpnTFAVCTeHRGILLQANSDKDMHDWLYAFNPLL 1120 

                   aka<-*
                   a     
   mKIAA4102  1121 AGT    1123 

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