hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06734/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4102  ( 1138 res)   mbg06734

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       75.0    1.5e-18   1
FHA      FHA domain                                      46.5    5.7e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FHA        1/1     217   288 ..     1    94 []    46.5  5.7e-10
PH         1/1    1024  1121 ..     1    92 []    75.0  1.5e-18

Alignments of top-scoring domains:
FHA: domain 1 of 1, from 217 to 288: score 46.5, E = 5.7e-10
                   *->vtiGRdsdsddilldddqdislsg.siSrrHatieykdggvslelaf
                      +++GR       + ++ qdi+lsg++i  +H+ ++ ++ g++     
   mKIAA4102   217    TRVGR------EDAERRQDIVLSGhFIKEEHCIFRSDSRGGGEAVV- 256  

                   rlaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +l++++++     t+vNgk++  +ep  L+sG++i +G  
   mKIAA4102   257 ----------TLEPCEGAD----TYVNGKKV--TEPSILRSGNRIIMG   288  

                   *
                    
   mKIAA4102     -   -    

PH: domain 1 of 1, from 1024 to 1121: score 75.0, E = 1.5e-18
                   *->vikeGwLlkkg.gkkswkkRyfvLfndvLlyykdkk.kkpkgsipLs
                      v k+G+L+  ++   +w kR++v+++ + ++y ++k+   + +++Ls
   mKIAA4102  1024    VSKKGYLHFLEpHTAGWAKRFVVVRRPYAYMYNSDKdTVERFVLNLS 1070 

                   giqvekvpdn....krkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   ++qve+ +d++   k++n+F + t++r  +llqa+s++++++W+ a++ +
   mKIAA4102  1071 TAQVEYSEDQqamlKTPNTFAVCTeHR-GILLQANSDKDMHDWLYAFNPL 1119 

                   ir<-*
                   ++   
   mKIAA4102  1120 LA    1121 

//