hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj04296/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4096  ( 1264 res)   mfj04296

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   124.2    1.5e-32   1
HELICc   helicase superfamily c-terminal domain          84.1    1.7e-20   1
S1       Ribosomal protein S1-like RNA-binding domain    75.6    6.3e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S1         1/1     307   380 ..     1    72 []    75.6  6.3e-18
DEXDc      1/1     607   791 ..     1   219 []   124.2  1.5e-32
HELICc     1/1     835   939 ..     1    86 []    84.1  1.7e-20

Alignments of top-scoring domains:
S1: domain 1 of 1, from 307 to 380: score 75.6, E = 6.3e-18
                   *->evGdvveGtVtsitpfGafVdlgn...gveGlihiselsddr.vkdp
                       +Gd++ G+Vtsi  fG+fV+l++ ++  eGl+hisel ++ +v ++
   mKIAA4096   307    AIGDIYNGKVTSIMQFGCFVQLEGlrkRWEGLVHISELRREGrVANV 353  

                   eevlkvGdevkvkVlsvdkekgrisLslk<-*
                    +v+ +G++vkvkVls+     + sLs+k   
   mKIAA4096   354 ADVVSKGQRVKVKVLSFTG--TKTSLSMK    380  

DEXDc: domain 1 of 1, from 607 to 791: score 124.2, E = 1.5e-32
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         + ++  ++ ++++++++ +i++++TGsGKT++++++l+e+++ +
   mKIAA4096   607    ESlPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTS 653  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                            ++++ +++P+r++a+ +a+++++++          + ++g 
   mKIAA4096   654 ---------RGKIGCTQPRRVAAMSVAKRVSEEF----------GCCLGQ 684  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     G ++     ++++++s  t i ++T g+Ll++   ++  +l+++ +++
   mKIAA4096   685 EVGyTI-----RFEDCTSPETVIKYMTDGMLLREClIDP--DLtQYAIIM 727  

                   lDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppeien
                   lDEaH++          ++d+l +llk++ +++++ ++++ SAT+ +  +
   mKIAA4096   728 LDEAHERT--------IHTDVLFgLLKKTvqkRQDMKLIVTSATL-DAVK 768  

                   llklflnlpelfpnpvfisvgftlepieqf<-*
                   ++++f        +p+f ++g+   p+e+    
   mKIAA4096   769 FSQYFYE------APIFTIPGR-TYPVEIL    791  

HELICc: domain 1 of 1, from 835 to 939: score 84.1, E = 1.7e-20
                   *->delaelLkellkd.pgikvarlHGglsqeeReeilekFrkgkikvLv
                      ++l+e++k+l +d p++ ++++++ l++e++++i++  + g +kv++
   mKIAA4096   835    EILYERMKSLGPDvPELIILPVYSALPSEMQTRIFDPAPPGSRKVVI 881  

                   aTdvaerGlDipgvdlVInydl..................pwspasyiQR
                   aT++ae++l+i+g+ +V++ ++ +++  +++++ ++   +p+s a++ QR
   mKIAA4096   882 ATNIAETSLTIDGIYYVVDPGFvkqkvynsktgidqlvvtPISQAQAKQR 931  

                   iGRaGRaG<-*
                   +GRaGR G   
   mKIAA4096   932 AGRAGRTG    939  

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