hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mni/mni24090/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4094 ( 386 res) mni24090 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family 269.7 3.8e-77 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SAC3_GANP 1/1 93 315 .. 1 249 [] 269.7 3.8e-77 Alignments of top-scoring domains: SAC3_GANP: domain 1 of 1, from 93 to 315: score 269.7, E = 3.8e-77 *->erpnPeeLrplkvLlktldyLvdkildq.aeyeaeraWYsfvddrlr rp P++Lrp++vLl+t++yL ++++ ++++++ae+a sfv+drlr mKIAA4094 93 PRPPPSLLRPPPVLLATVRYLAGEVAGRgDVSCAEVA--SFVADRLR 137 sirqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqele ++r Dl++qgv+d+++++++E+ +++++++ar+++Ee+++++D++++++ mKIAA4094 138 AVRLDLSLQGVDDADAATVLEAALATLLAVVARVRPEETRGAADPVLLQT 187 elnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdf +++++ + +L+++Y+++k++ +p++a+f+ g++lLy +l++ + mKIAA4094 188 QVQEG--FGSLRRCYARGKGP---YPRQAAFQ-GLFLLY----NLGSVEA 227 htelellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllq + e+++l p+++r +p+++ al+++aa++e n ++++frll+ mKIAA4094 228 LQEVLQL---PAALRACPPLQAALAVDAAFREDN-------HARLFRLLR 267 knnqppylcdysclmddifldtiRkealrvisksYnsr...hqkiplkyl + +pyl +sc+++ ++ ++R++al+ +s++ +++++q++pl+++ mKIAA4094 268 T---LPYL--QSCAVQ-EHIGYARRKALARLSRAL--StpkGQTLPLDFI 309 aelLgf<-* +++L++ mKIAA4094 310 EHFLAL 315 //