hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj26207/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4093  ( 871 res)   mfj26207

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DYNc     Dynamin, GTPase                                604.5   3.7e-177   1
GED      Dynamin GTPase effector domain                 120.7    1.7e-31   1
PH       Pleckstrin homology domain.                     49.9    3.3e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DYNc       1/1      26   265 ..     1   246 []   604.5 3.7e-177
PH         1/1     540   647 ..     1    82 []    49.9  3.3e-10
GED        1/1     674   765 ..     1    97 []   120.7  1.7e-31

Alignments of top-scoring domains:
DYNc: domain 1 of 1, from 26 to 265: score 604.5, E = 3.7e-177
                   *->mekliplvnklqdafssLGiekdLdLPqIAVvGgQSaGKSSvLEnlv
                      me+liplvn+lqdafs++G++ dLdLPqIAVvGgQSaGKSSvLEn+v
   mKIAA4093    26    MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFV 72   

                   GkdFLPRGsGIVTRrPLiLkLikiPtstEykeflhykniskklqhfdEvr
                   G+dFLPRGsGIVTRrPL+L+L++  + tEy+eflh+k+  kk+++f+Evr
   mKIAA4093    73 GRDFLPRGSGIVTRRPLVLQLVN--STTEYAEFLHCKG--KKFTDFEEVR 118  

                   neIenetDrVtGtnkgISgvlInLrvySPyVlnLTLIDLPGitkVavgdQ
                    eIe+etDrVtGtnkgIS+v+InLrvySP+VlnLTL+DLPG+tkV+vgdQ
   mKIAA4093   119 LEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQ 168  

                   PqDIeeQIKklIkkfIskeetliLaVvPaNvDlAnsdALKlAkEVDPkGe
                   P+DIe QI+++ ++f+ ke +liLaV PaN DlAnsdALK+AkEVDP+G 
   mKIAA4093   169 PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQ 218  

                   RTiGviTKlDLvDeGTdeYardileNkllPLRrGYigVvnRsQkDIegr<
                   RTiGviTKlDL+DeGTd  ard+leNkllPLRrGYigVvnRsQkDI+g+ 
   mKIAA4093   219 RTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGK  265  

                   -*
                     
   mKIAA4093     -    -    

PH: domain 1 of 1, from 540 to 647: score 49.9, E = 3.3e-10
                   *->vikeGwLlkks....k.swkkryfvLfngvLlyyksk...kpkgsip
                      vi++GwL++   +  k++ k+++fvL+   L++yk+++++++k +++
   mKIAA4093   540    VIRKGWLTINNigimKgGSKEYWFVLTAENLSWYKDDeekEKKYMLS 586  

                   Lsgcsvre.p........cFeivt.dr........tlllqAeseeereeW
                   ++++++r+ +++  ++++ F ++++++++  ++ + l+l++e++ee ++W
   mKIAA4093   587 VDNLKLRDvEkgfmsskhIFALFNtEQrnvykdyrQLELACETQEEVDSW 636  

                   vealqsaiaka<-*
                    +++ +a       
   mKIAA4093   637 KASFLRAGVYP    647  

GED: domain 1 of 1, from 674 to 765: score 120.7, E = 1.7e-31
                   *->qedseleeIksllkSYfnivrktladqvPkaImhllvneskdslqnF
                      q ++++e+I++l++SY+ iv kt++d  Pk Imhl++n++k+++ + 
   mKIAA4093   674    QLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFS- 719  

                   QellakLykpraeelldeLLeEdpeiaskRkelkkrLelLkkArqiisev
                    ella Ly    +++++ L+eE+ e a++R e+ +++++Lk+A +ii ++
   mKIAA4093   720 -ELLANLYS---CGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDI 765  

                   <-*
                      
   mKIAA4093     -     -    

//