hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj26207/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4093 ( 871 res) mfj26207 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Dynamin_M Dynamin central region 541.2 7e-159 1 Dynamin_N Dynamin family 314.7 1.1e-90 1 GED Dynamin GTPase effector domain 123.5 3.9e-33 1 PH PH domain 63.5 4.4e-15 1 MMR_HSR1 GTPase of unknown function -12.4 0.09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Dynamin_N 1/1 54 227 .. 1 217 [] 314.7 1.1e-90 MMR_HSR1 1/1 52 228 .. 1 140 [] -12.4 0.09 Dynamin_M 1/1 236 529 .. 1 299 [] 541.2 7e-159 PH 1/1 540 645 .. 1 92 [] 63.5 4.4e-15 GED 1/1 674 765 .. 1 98 [] 123.5 3.9e-33 Alignments of top-scoring domains: Dynamin_N: domain 1 of 1, from 54 to 227: score 314.7, E = 1.1e-90 *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges IaVvG qS+GKSSvL++ +Grdf LP rg+g ++Trrplv lql++ mKIAA4093 54 IAVVGGQSAGKSSVLENFVGRDF-LP-RGSG-IVTRRPLV-LQLVN- 95 peaieivsipgavkveykdflh.plkkfedfsevreeieketdriagknk + ey++flh ++kkf+df+evr eie+etdr++g+nk mKIAA4093 96 ------------STTEYAEFLHcKGKKFTDFEEVRLEIEAETDRVTGTNK 133 gisseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSv gis++ pi+l+++sp+v++ltLVD+PG ++ v mKIAA4093 134 GISPV------------------PINLRVYSPHVLNLTLVDLPGMTK--V 163 avgdqqPeDieeqIrelteeyiskpadiILaVvpAnvaLdlstssdealf +vgdq P+Die qIr++ +++ k++++ILaV+pAn+ dl++s +al+ mKIAA4093 164 PVGDQ-PPDIEFQIRDMLMQFVTKENCLILAVSPANS--DLANS--DALK 208 larevdpkgerdktigVltKd<-* +a+evdp+g r tigV+tK+ mKIAA4093 209 IAKEVDPQGQR--TIGVITKL 227 MMR_HSR1: domain 1 of 1, from 52 to 228: score -12.4, E = 0.09 *->lrvaivGrPNVGKSTLiNaLtgk.....kraiVsdyPGtTrdpnegr +++a+vG +GKS+ + +g++ ++ iV+ +P + +++ mKIAA4093 52 PQIAVVGGQSAGKSSVLENFVGRdflprGSGIVTRRP---LVLQLVN 95 vel............................................... +++ + + ++++ ++ ++ + + + ++++ ++++++ ++ + + + mKIAA4093 96 STTeyaeflhckgkkftdfeevrleieaetdrvtgtnkgispvpinlrvy 145 ..dgrqiilvDTPGiiegaskgeg.....elgertleaieeaDlilfVvD ++ +++lvD+PG + ++ ++ + + + + + ++++ v mKIAA4093 146 spHVLNLTLVDLPGMTKVPVGDQPpdiefQIRDMLMQFVTKENCLILAVS 195 ase.gltedytieeDleiadllyd.eerernleltLqelekkgkPvilvl ++ l +++++ ++ +e + g+++i v+ mKIAA4093 196 PANsDLA----------------NsDAL-----KIAKEVDPQGQRTIGVI 224 NKiD<-* +K D mKIAA4093 225 TKLD 228 Dynamin_M: domain 1 of 1, from 236 to 529: score 541.2, E = 7e-159 *->avDiLrNrViPLkkGYmgVvNRGQqDIqekkSlteALqkErkFFenH a+D+L+N+++PL++GY+gVvNR+Q+DI +kk++t+AL++ErkFF +H mKIAA4093 236 ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSH 282 PsYrtLadrggaTvPyLAkkLtqeLvsHIrktLPdLenqInetlqqtekE PsYr+Ladr+g+ PyL+k+L+q+L++HIr+tLP+L+n+++++l+++ekE mKIAA4093 283 PSYRHLADRMGT--PYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKE 330 LqkYGadipedeaeKtafLlqkItaFnqdiislieGeekevstnElrgGa + +Y++++p+d+a+Kt++Llq++++F+ d+++ ieG++++++t+El+gGa mKIAA4093 331 VDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGA 380 rIryiFhewfghllesfdpdeklirsdIrtaernyrGrelpLFvpykaFE rI++iFhe+f+++l+++++dek++r++I++a++n++G++ +LF+p+ aFE mKIAA4093 381 RINRIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDLAFE 430 viVKkQIkrLeEPalkcvelVteelrkifhqcsNstkefsrFpnLrraak + VKkQ+++L+EP++kcv++V+ el ++++cs +++++p+Lr++++ mKIAA4093 431 ATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEME 477 ekiedilreqeepaekmIrllfdmEqiyyntdhpyfiglqkarekeaeke +++++++re+e +++++++ll+d+E++y+nt+h++fig+++a++++ +++ mKIAA4093 478 RIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMN 527 kk<-* kk mKIAA4093 528 KK 529 PH: domain 1 of 1, from 540 to 645: score 63.5, E = 4.4e-15 *->vikeGwLlkkg...gkkswkkRyfvLfndvLlyykdkk.kkpkgsip vi++GwL+ + k++ k+++fvL+ +L++ykd+ +k++k++++ mKIAA4093 540 VIRKGWLTINNigiMKGGSKEYWFVLTAENLSWYKDDEeKEKKYMLS 586 Lsgiqvekvpdn..krkncFeirt.dr.......etlllqaeseeerkeW ++++++++v+++ k+ F + ++++++ ++ ++l+l++e++ee ++W mKIAA4093 587 VDNLKLRDVEKGfmSSKHIFALFNtEQrnvykdyRQLELACETQEEVDSW 636 vkaiqsair<-* +++ +a mKIAA4093 637 KASFLRAGV 645 GED: domain 1 of 1, from 674 to 765: score 123.5, E = 3.9e-33 *->qeeseleeIklllkSYfnivrktladqvPKaImyllvnefKdslqnF q e+++e+I++l++SY+ iv kt++d PK Im+l++n++K+++ + mKIAA4093 674 QLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFS- 719 QKellakLykPrakelfdeLLeEspeiaskRkelkkrLerLkkArqiise ella Ly +++++ L+eEs e a++R e+ +++++Lk+A +ii + mKIAA4093 720 --ELLANLYS---CGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGD 764 v<-* + mKIAA4093 765 I 765 //