hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej00160/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4090  ( 483 res)   mej00160

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CNH      Domain found in NIK1-like kinases, mouse cit   385.7   2.7e-111   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CNH        1/1     165   463 ..     1   375 []   385.7 2.7e-111

Alignments of top-scoring domains:
CNH: domain 1 of 1, from 165 to 463: score 385.7, E = 2.7e-111
                   *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkdhegtlekl
                      +++++n++i+c++LWG++LLvgTe GL++l++s+q      g+++ l
   mKIAA4090   165    YKKRFNSEILCAALWGVNLLVGTENGLMLLDRSGQ------GKVYGL 205  

                   isrrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltqgntpiik
                   i+rr+++q++vle++n+L++isGk+ +l++++Ls+l++k           
   mKIAA4090   206 IGRRRFQQMDVLEGLNLLITISGKRNKLRVYYLSWLRNK----------- 244  

                   dalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilflcaalqss
                     l+++  v++k+++ t+++d +G c +++v v+++r  i+fl+ al+ s
   mKIAA4090   245 -ILHNDPEVEKKQGW-TTVGDMEG-CGHYRV-VKYER--IKFLVIALKNS 288  

                   VvllaqwynplkkfklvksSNNiLNNEledikkflkklivplplfvelvs
                   V+++a++++p++kf+ +ks                ++ + + pl+v+l++
   mKIAA4090   289 VEVYAWAPKPYHKFMAFKS----------------FADLPHRPLLVDLTV 322  

                   ssfelpkvciGsdkPVGGdaggdvvqfhqdphlNslkfkeslvskedlsl
                   ++ +++kv++Gs+       g+++v+++             + + +d+++
   mKIAA4090   323 EEGQRLKVIYGSSA------GFHAVDVD-------------SGNSYDIYI 353  

                   pfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvfVNlqGle
                   p ++++ +      +p+++++++++dg   +e Llcy+++gv+VN++G  
   mKIAA4090   354 PVHIQSQI------TPHAIIFLPNTDG---MEMLLCYEDEGVYVNTYG-- 392  

                   vrrsrkpiltwefmpesfayve.pyllafhsngieIrsiktgelNlqela
                    r  ++++l+w++mp+s+ay+ +++++++++++ie rs++tg+l +++++
   mKIAA4090   393 -RIIKDVVLQWGEMPTSVAYICsNQIMGWGEKAIETRSVETGHL-DGVFM 440  

                   drsiikarkiRlLgsCeisdrkIllsssp<-*
                   ++   +a+++++L++   +++k++++s +   
   mKIAA4090   441 HK---RAQRLKFLCE---RNDKVFFASVR    463  

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