hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej00160/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4090  ( 483 res)   mej00160

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CNH      CNH domain                                     325.7    5.2e-94   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CNH        1/1     170   461 ..     1   363 []   325.7  5.2e-94

Alignments of top-scoring domains:
CNH: domain 1 of 1, from 170 to 461: score 325.7, E = 5.2e-94
                   *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhdaflgklvkiigrrsv
                      ++++ +a ++g+nLLvGTe GL++l+rs+q     gk++ +igrr++
   mKIAA4090   170    NSEILCAALWGVNLLVGTENGLMLLDRSGQ-----GKVYGLIGRRRF 211  

                   tqlevieelnlLllLseGKkrhLylhpLsaLetekkdtaqgsskinklpe
                   +q++v+e+lnlL+++s GK ++L++++Ls+L                 ++
   mKIAA4090   212 QQMDVLEGLNLLITIS-GKRNKLRVYYLSWL-----------------RN 243  

                   ktlarrfavskKipetkghCklccvgfiregycggtkFlcvvAlksddls
                   k+l+ +++v+kK ++t++++ ++c +   + y+++ kFl++ Alk     
   mKIAA4090   244 KILHNDPEVEKKQGWTTVGDMEGCGHYRVVKYERI-KFLVI-ALKN---- 287  

                   tsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpepvqsief
                    s+++y+W                        ++kp++++++++++    
   mKIAA4090   288 -SVEVYAW------------------------APKPYHKFMAFKSFADLP 312  

                   lkpslcvGcskgfeillvlfgss.gfhslsleGqseaaldlllPsndlsl
                   ++p+l++++++ +++l+v++gss gfh+++++  s++++d++ P + +s 
   mKIAA4090   313 HRPLLVDLTVEEGQRLKVIYGSSaGFHAVDVD--SGNSYDIYIPVHIQSQ 360  

                   efakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqGrrsrkk
                   +             ++ ++++++ d++e LLC++++gv+VN++Gr  ++ 
   mKIAA4090   361 I------------TPHAIIFLPNTDGMEMLLCYEDEGVYVNTYGRIIKDV 398  

                   kdiselmWegaPesfayslypyllafhdngieIrsletgeltqeladrvq
                       +l+W ++P+s+ay+++++++++++++ie rs+etg+l+++++++ +
   mKIAA4090   399 ----VLQWGEMPTSVAYICSNQIMGWGEKAIETRSVETGHLDGVFMHKRA 444  

                   tillnkirllvslrsls<-*
                   + l+++++++++++++s   
   mKIAA4090   445 QRLKFLCERNDKVFFAS    461  

//