hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12616/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4089  ( 1251 res)   mbg12616

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                  213.3    2.2e-59   4
HormR    Domain present in hormone receptors             82.7    4.5e-20   1
GPS      G-protein-coupled receptor proteolytic site     76.9    2.5e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/4      21    71 ..     1    66 []    38.2  1.1e-06
TSP1       2/4      76   126 ..     1    66 []    68.8  6.8e-16
TSP1       3/4     134   184 ..     1    66 []    64.3  1.6e-14
TSP1       4/4     189   239 ..     1    66 []    65.5  6.6e-15
HormR      1/1     241   307 ..     1    89 []    82.7  4.5e-20
GPS        1/1     544   602 ..     1    51 []    76.9  2.5e-18

Alignments of top-scoring domains:
TSP1: domain 1 of 4, from 21 to 71: score 38.2, E = 1.1e-06
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                        eWs+WS CS  tCG+G     ++tRt     + c   +       
   mKIAA4089    21    AEEWSPWSVCS-STCGEG-----WQTRT-----HFCVSSSY-----S 51   

                   epCs....EtrpCntqpnLqpCp<-*
                    +Cs++ +E+r Cn +   ++Cp   
   mKIAA4089    52 TQCSgplrEQRLCNNS---AVCP    71   

TSP1: domain 2 of 4, from 76 to 126: score 68.8, E = 6.8e-16
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eWs+WS CS  tCG+G     +r RtR     +c+pp+    +gg
   mKIAA4089    76    WDEWSPWSLCS-STCGRG-----FRDRTR-----TCRPPQ----FGG 107  

                   epCs....EtrpCntqpnLqpCp<-*
                    pC++++++t+ Cn       Cp   
   mKIAA4089   108 NPCEgpekQTKFCNIA----LCP    126  

TSP1: domain 3 of 4, from 134 to 184: score 64.3, E = 1.6e-14
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eWs+WS+CS ++C  G     +++RtR      c++p+     gg
   mKIAA4089   134    WNEWSSWSTCS-ASCSQG-----RQQRTR-----ECNGPS----YGG 165  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C+++  Etr+C++q     Cp   
   mKIAA4089   166 AECQghwvETRDCFLQ----QCP    184  

TSP1: domain 4 of 4, from 189 to 239: score 65.5, E = 6.6e-15
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w +W +W++CS vtCGgG      ++R+R     +cs+p     +gg
   mKIAA4089   189    WQAWASWGSCS-VTCGGG-----SQRRER-----VCSGPF----FGG 220  

                   epCs....EtrpCntqpnLqpCp<-*
                   + C+++++E+r+C  q     Cp   
   mKIAA4089   221 AACQgpqdEYRQCGAQ----RCP    239  

HormR: domain 1 of 1, from 241 to 307: score 82.7, E = 4.5e-20
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                      +++ C +++ g + W++TpaG+++av CP++++g+            
   mKIAA4089   241    PHEICDEDNFGAVVWKETPAGEVAAVRCPRNATGL------------ 275  

                   asRnCtedt.GvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                   + R+C +d++G++ W++           p y++C s+dy++++   
   mKIAA4089   276 ILRRCELDEeGIAFWEP-----------PTYIRCVSIDYRNIQ    307  

GPS: domain 1 of 1, from 544 to 602: score 76.9, E = 2.5e-18
                   *->snpiCvfWdese.........tgeWstrGCelvetnkpthttCsCnH
                      +n++C  Wde+++++++ ++++g Ws+rGC++v++++  +t+C+C++
   mKIAA4089   544    TNQTCILWDETDgpsssappqLGPWSWRGCRTVPLDA-LRTRCLCDR 589  

                   LTsFAvLmdvspn<-*
                   L++FA+L+++s++   
   mKIAA4089   590 LSTFAILAQLSAD    602  

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