hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/meg/meg00461/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4087 ( 1285 res) meg00461 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LamG Laminin G domain 598.2 3e-175 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LamG 1/5 333 478 .. 1 137 [] 100.3 2.3e-25 LamG 2/5 527 667 .. 1 137 [] 127.2 1.8e-33 LamG 3/5 709 855 .. 1 137 [] 108.8 6.1e-28 LamG 4/5 948 1081 .. 1 137 [] 145.9 4.1e-39 LamG 5/5 1123 1259 .. 1 137 [] 123.2 2.8e-32 Alignments of top-scoring domains: LamG: domain 1 of 5, from 333 to 478: score 100.3, E = 2.3e-25 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl + ++i ++++T ++ lL+y+g+ + dfla+e++ G++ + mKIAA4087 333 SyNNIVVHVKTAVADNLLFYLGsakFIDFLAIEMR------KGKVSF 373 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.. +d Gs g++r+++++ +++D W+r++++r+gr++++sV + mKIAA4087 374 LWDVGS----GVGRVEYPD---LTIDDSYWYRIEASRTGRNGSISVRAld 416 gnpvsges...........t.LdldkeesgplylGGlPe......lpvsp g +s++ ++ ++ ++++ t Ld+d +++l++GGl + ++ + + mKIAA4087 417 GPKASMVPstyhsvsppgyTiLDVDA--NAMLFVGGLTGkikkadAVRVI 464 gFrGCirnlrvngk<-* F+GC+ + ++++k mKIAA4087 465 TFTGCMGETYFDNK 478 LamG: domain 2 of 5, from 527 to 667: score 127.2, E = 1.8e-33 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl + +++ f FrT+s+++lL+y+++++ +df+++eL+ dG++++ mKIAA4087 527 NiSTVMFKFRTFSSSALLMYLAtrdLKDFMSVELS------DGHVKV 567 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.. +ydlGs g +++ s+ + nDG+W +++r ++++++s+ + + mKIAA4087 568 SYDLGS----GMTSVVSN----QNHNDGKWKAFTLSRIQKQANISIVDid 609 ...gnpvsges....t.LdldkeesgplylGGlPe......lpvspgFrG +++++ v ++s++++ +Ldl+ ++++y+GGlP ++ ++ ++ + ++G mKIAA4087 610 snqEENVATSSsgnnFgLDLKA--DDKIYFGGLPTlrnlrpEVNVKKYSG 657 Cirnlrvngk<-* C++++ + + mKIAA4087 658 CLKDIEISRT 667 LamG: domain 3 of 5, from 709 to 855: score 108.8, E = 6.1e-28 *->t.lsisfsFrTtspnGlLlyag..............ggdflaleLvl +++i +sF T+ ++G++l ++++ +++++++++++ ++a++L+ mKIAA4087 709 VgTEINLSFSTRNESGIILLGSggtltpprrkrrqtTQAYYAIFLN- 754 EDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsverng Grl+++++ G + t++++++ +++ + ++DG+ H+V+ver++ mKIAA4087 755 -----KGRLEVHLSSGTR-TMRKIVIKPEP---NLFHDGREHSVHVERTR 795 rsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe......lpv + t+++D +++ ++ + +++++++++ +l++GG+P++ ++++l + mKIAA4087 796 GIFTVQID-EDRRHMQNlteeQpIEVK-----KLFVGGAPPefqpspLRN 839 spgFrGCirnlrvngk<-* p F+GC+ nl++n+ mKIAA4087 840 IPAFQGCVWNLVINSI 855 LamG: domain 4 of 5, from 948 to 1081: score 145.9, E = 4.1e-39 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl ++l+i++++rT++++GlL+y+++ ++ df +++L+ +G++++ mKIAA4087 948 NrLTIELEVRTEAESGLLFYMArinHADFATVQLR------NGFPYF 988 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn +ydlGs g ++++ + t++nDGqWH+++++r ++++ L+VD + mKIAA4087 989 SYDLGS----GDTSTMIP----TKINDGQWHKIKIVRVKQEGILYVD-DA 1029 pvsges....t.LdldkeesgplylGGlPe.......lpvspgFrGCirn + ++ s+++ + Ld+ g ly+GGlP + ++++ +pv+ +++GC+rn mKIAA4087 1030 SSQTISpkkaDiLDVV----GILYVGGLPInyttrriGPVTYSLDGCVRN 1075 lrvngk<-* l + + mKIAA4087 1076 LHMEQA 1081 LamG: domain 5 of 5, from 1123 to 1259: score 123.2, E = 2.8e-32 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr +l ++f+FrTt p+G+Ll +++++ d + +e++ d +l+++ mKIAA4087 1123 LdLLVEFEFRTTRPTGVLLGVSsqKMDGMGIEMI------DEKLMFH 1163 ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnp +d+G+ g+++ +d p +++ GqWH+V++ +++++L+VD gn+ mKIAA4087 1164 VDNGA----GRFTAIYDAGIPGHMCNGQWHKVTAKKIKNRLELVVD-GNQ 1208 vsges.....t.LdldkeesgplylGGlPe......lpvspgFrGCirnl v + s+++ +t+ d++ +p+++GG P + ++ +l+++ FrGCir+l mKIAA4087 1209 VDAQSpnsasTsADTN----DPVFVGGFPGglnqfgLTTNIRFRGCIRSL 1254 rvngk<-* ++ mKIAA4087 1255 KLTKG 1259 //