hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/meg/meg00461/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4087 ( 1285 res) meg00461 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Laminin_G_1 Laminin G domain 714.3 5.5e-211 5 Laminin_G_2 Laminin G domain 500.5 1.3e-146 5 Laminin_II Laminin Domain II 196.5 4.1e-55 1 Laminin_I Laminin Domain I -53.2 0.55 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Laminin_I 1/1 29 257 .. 1 278 [] -53.2 0.55 Laminin_II 1/1 204 340 .. 1 144 [] 196.5 4.1e-55 Laminin_G_2 1/5 341 478 .. 1 141 [] 77.7 2.5e-19 Laminin_G_1 1/5 341 481 .. 1 154 [] 143.7 3.3e-39 Laminin_G_2 2/5 535 667 .. 1 141 [] 99.9 5.1e-26 Laminin_G_1 2/5 535 670 .. 1 154 [] 159.8 4.7e-44 Laminin_G_2 3/5 717 855 .. 1 141 [] 81.8 1.4e-20 Laminin_G_1 3/5 717 858 .. 1 154 [] 153.1 4.9e-42 Laminin_G_2 4/5 956 1081 .. 1 141 [] 138.1 1.6e-37 Laminin_G_1 4/5 956 1084 .. 1 154 [] 182.3 8e-51 Laminin_G_2 5/5 1131 1259 .. 1 141 [] 105.6 9.7e-28 Laminin_G_1 5/5 1131 1265 .. 1 154 [] 76.0 7.6e-19 Alignments of top-scoring domains: Laminin_I: domain 1 of 1, from 29 to 257: score -53.2, E = 0.55 *->qLdsvGDAllnlNlTglspapyrkLselentakdLqtqLlerlspls +L + s + k+ +l +++kd ++L e + + mKIAA4087 29 KLPPM------------SEELSDKIDDLAQEIKD--RRLAEKVFQAE 61 kegiqidgaekklskLaqdaenLqekanqalakaqkvnaeiertlgnAkt ++++q++ +++ l +++ +a+n + a+ a + + +i++ +++A+ mKIAA4087 62 SHAAQLNDSSAVLDGILDEAKNISFNATAAFRA----YSNIKDYIDEAEK 107 LaeaiknlrdnikeilsklaglgeTlanaealpseaLsemlaeAqrmLee a ++k l++ ++ + + gl + e+ + l+ r+L+e mKIAA4087 108 VAREAKELAQGATKLATSPQGLLK----------EDAKGSLQKSFRILNE 147 tirsrdpftkhlqeaeaelkaAqeLLsrvtAqellqklqeenksLaealr ++ + + ++ + L+ ++l++ n +L+ al+ mKIAA4087 148 ---AKK-LANDVKGNHND-------LNDL--KTRLETADLRNSGLLGALN 184 ddLndynakLsDlrelldeAqaktrdAerlnlanqkrlreieekkeevee d +++ +a D + l+++++k+r+A++ a+ + + + ++ +++ mKIAA4087 185 DTMDKLSAITNDTAAKLQAVKEKAREANDTAKAVLAQVK---DLHQNLDG 231 lkeqieetLatgrdsLdqanlElLqeldqal<-* lk+ +++ +ds++++n+ + + mKIAA4087 232 LKQNYNKL----ADSVAKTNA-VVKDPSKNK 257 Laminin_II: domain 1 of 1, from 204 to 340: score 196.5, E = 4.1e-55 *->sKemAdeAnetaaaVlkelepiqtnvsnikaslsklngdleetnklv +Ke A+eAn+ta+aVl +++++++n++ k++++kl++++++tn++v mKIAA4087 204 VKEKAREANDTAKAVLAQVKDLHQNLDGLKQNYNKLADSVAKTNAVV 250 sdpsankaiddArrsvrklnklapyLldkLkpleklsvasqsrtdslsrn +dps nk i dA++svr+l+++a++L+dkLkp+++l+++ l +n mKIAA4087 251 KDPSKNKIIADAGTSVRNLEQEADRLIDKLKPIKELEDN-------LKKN 293 isriKelIaqARkaAnkIkVsvnfdGdsglelrppisltdlaaltsl<-* is+iKelI+qARk+An+IkVsv++ Gd+++++rp+i+ ++++++ ++ mKIAA4087 294 ISEIKELINQARKQANSIKVSVSSGGDCVRTYRPEIKKGSYNNIVVH 340 Laminin_G_2: domain 1 of 5, from 341 to 478: score 77.7, E = 2.5e-19 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl ++T ++ lL+y+g+++ d fla+e++ G++ + +d mKIAA4087 341 VKT-AVADNLLFYLGSAkF--------ID-FLAIEMRKGKVSFLWDV 377 Gsgg.vlltsg.klnDGqWHtVsverngrsvtLs...VDgg.vv.g.spg Gsg + + +++ +++D W++++++r gr++++s + +Dg +++ ++s+ mKIAA4087 378 GSGVgRVEYPDlTIDDSYWYRIEASRTGRNGSISvraLDGPkASmVpSTY 427 ssdtl......slnlngplylGGlpessksslltltaaqnlvvvs.gFvG +s+++++ + ++ n l++GGl k+ ++ F+G mKIAA4087 428 HSVSPpgytilDVDANAMLFVGGLTGKIKKADAVR---------ViTFTG 468 Cirdvringe<-* C+ + +++++ mKIAA4087 469 CMGETYFDNK 478 Laminin_G_1: domain 1 of 5, from 341 to 481: score 143.7, E = 3.3e-39 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl ++T+ ++lL+ Y+G+++++ DFla+e+++G++ + +d+ mKIAA4087 341 VKTAVADNLLF--YLGSAKFI--------DFLAIEMRKGKVSFLWDV 377 GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeer...... Gsg + v ++d +++D++W+r+e++r+gr+g++sV+ + ++ + mKIAA4087 378 GSG----VGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGpkasmv 423 ..vvdgespsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsF +++ + sp g++i + +d++++ L+vGGl + k+ +a+ + F mKIAA4087 424 psTYHSVSPPGYTILD--VDANAM--LFVGGLT---GKIKKADAVRVITF 466 kGCirdvsingkpld<-* GC+++ ++++kp++ mKIAA4087 467 TGCMGETYFDNKPIG 481 Laminin_G_2: domain 2 of 5, from 535 to 667: score 99.9, E = 5.1e-26 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl FRT ++++lL+y+++++ +d f+++eL dG+++++ydl mKIAA4087 535 FRT-FSSSALLMYLATRdL--------KD-FMSVELSDGHVKVSYDL 571 Gsgg.vlltsg.klnDGqWHtVsverngrsvtLs.VDgg.vv.g.spgss G +g ++++s+++ nDG+W +++r ++++ +s VD ++++++ ss mKIAA4087 572 G-SGmTSVVSNqNHNDGKWKAFTLSRIQKQANISiVDIDsNQeEnVATSS 620 dtl....slnlngplylGGlpessksslltltaaqnlvvvs.gFvGCird ++++ + l + +y+GGlp + +++ + + + GC++d mKIAA4087 621 SGNnfglDLKADDKIYFGGLPTLRNLRPEVN---------VkKYSGCLKD 661 vringe<-* + i mKIAA4087 662 IEISRT 667 Laminin_G_1: domain 2 of 5, from 535 to 670: score 159.8, E = 4.7e-44 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl FRT+++s+lL+ Y++t++ + DF+++eL dG+++vsydl mKIAA4087 535 FRTFSSSALLM--YLATRDLK--------DFMSVELSDGHVKVSYDL 571 GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeer..vvdg Gsg +++v+s+++ +nDGkW ++l+r+++++++s+ + ++++++++ mKIAA4087 572 GSG----MTSVVSNQN-HNDGKWKAFTLSRIQKQANISIVDIDSnqEENV 616 espsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCird + s++++++ +L++d++ +y+GGlP + r+++++++++GC++d mKIAA4087 617 ATSSSGNNFGLDLKADDK--IYFGGLP---TLRNLRPEVNVKKYSGCLKD 661 vsingkpld<-* ++i++ p++ mKIAA4087 662 IEISRTPYN 670 Laminin_G_2: domain 3 of 5, from 717 to 855: score 81.8, E = 1.4e-20 *->FRTatqpnGlLlyaggk.g..lp.dtadpksdKflaLeLvdGrlvlr F T + ++G++l +g++ ++ ++ +++ ++ + a++L+ Grl+++ mKIAA4087 717 FST-RNESGIILLGSGGtLtpPRrKRRQTTQA-YYAIFLNKGRLEVH 761 ydlG...sgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g. ++ G+++ + v+ ++ + DG+ H+V ver ++ t+++D + + ++ mKIAA4087 762 LSSGtrtMRKiVIKPEPnLFHDGREHSVHVERTRGIFTVQIDEDrRHmQn 811 spgssdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCir ++++ +++ ++ l++GG+p++ +s+l+ + F+GC+ mKIAA4087 812 LTEE----QPIEVKKLFVGGAPPEFQPSPLRN---------IpAFQGCVW 848 dvringe<-* +++in++ mKIAA4087 849 NLVINSI 855 Laminin_G_1: domain 3 of 5, from 717 to 858: score 153.1, E = 4.9e-42 *->FRTtepsGlLllgYnGtntdrrgkkeig.dDFlaleLvdGrlevsyd F+T+++sG++llg++Gt t +r+k+++++++++a+ L++Grlev+++ mKIAA4087 717 FSTRNESGIILLGSGGTLTPPRRKRRQTtQAYYAIFLNKGRLEVHLS 763 lGsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdge G + ++r++v+ +++++++DG+ H+v++er++ ++t+++d+ +r + mKIAA4087 764 SGTR-TMRKIVIKPEPNLFHDGREHSVHVERTRGIFTVQIDEDRR---HM 809 spsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdv +++ ++ + +++ L+vGG+P ++++++++++ ++F GC++++ mKIAA4087 810 QNLTEEQ----PIEVKK--LFVGGAP---PEFQPSPLRNIPAFQGCVWNL 850 singkpld<-* +in+ p+d mKIAA4087 851 VINSIPMD 858 Laminin_G_2: domain 4 of 5, from 956 to 1081: score 138.1, E = 1.6e-37 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl +RT ++++GlL+y++ ++ d f +++L++G ++++ydl mKIAA4087 956 VRT-EAESGLLFYMARInH--------AD-FATVQLRNGFPYFSYDL 992 Gsgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd G +g+++++ ++k+nDGqWH+++++r ++++ L VD+ ++++++++ + mKIAA4087 993 G-SGdTSTMIPtKINDGQWHKIKIVRVKQEGILYVDDAsSQtIsPKKAD- 1040 tlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvring +l+++g ly+GGlp ++ ++++ + + +++GC+r++ + mKIAA4087 1041 --ILDVVGILYVGGLPINYTTRRIGPV--------TySLDGCVRNLHMEQ 1080 e<-* mKIAA4087 1081 A 1081 Laminin_G_1: domain 4 of 5, from 956 to 1084: score 182.3, E = 8e-51 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl +RT+++sGlL+ Y++ ++++ DF+ ++L++G++++sydl mKIAA4087 956 VRTEAESGLLF--YMARINHA--------DFATVQLRNGFPYFSYDL 992 GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdges Gsg ++++++++ +nDG+WH+++++r++++g+L+Vd+ + +++s mKIAA4087 993 GSG----DTSTMIPTK-INDGQWHKIKIVRVKQEGILYVDDASS--QTIS 1035 psgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdvs p+++di Ld+++ LyvGGlP +++ rr++++++s++GC+r+++ mKIAA4087 1036 PKKADI----LDVVGI--LYVGGLP--INYTTRRIGPVTYSLDGCVRNLH 1077 ingkpld<-* + p+d mKIAA4087 1078 MEQAPVD 1084 Laminin_G_2: domain 5 of 5, from 1131 to 1259: score 105.6, E = 9.7e-28 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl FRT t+p+G+Ll +++++ d + +e++d +l +++d mKIAA4087 1131 FRT-TRPTGVLLGVSSQkM---------D-GMGIEMIDEKLMFHVDN 1166 Gsgg.vlltsg.k...lnDGqWHtVsverngrsvtLsVDgg.vv.g.spg G g+ + +++ + ++++++GqWH+V++ +++++L+VDg +v +++ + mKIAA4087 1167 GAGRfTAIYDAgIpghMCNGQWHKVTAKKIKNRLELVVDGNqVDaQsPNS 1216 ssdtlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvr s+ s ++n p+++GG+p + + +lt+ + F+GCir+++ mKIAA4087 1217 AST--SADTNDPVFVGGFPGGLNQFGLTT---------NiRFRGCIRSLK 1255 inge<-* + mKIAA4087 1256 LTKG 1259 Laminin_G_1: domain 5 of 5, from 1131 to 1265: score 76.0, E = 7.6e-19 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl FRTt p+G+Ll g ++ d+ + +e++d +l +++d+ mKIAA4087 1131 FRTTRPTGVLL-GVSSQKMDG----------MGIEMIDEKLMFHVDN 1166 Gsghrlrpav.vrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdge G+g r +++++ +++ ++G+WH+v+++ ++ ++ L Vdg++ vd mKIAA4087 1167 GAG-RFTAIYdAGIPGH-MCNGQWHKVTAKKIKNRLELVVDGNQ--VDAQ 1212 spsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdv sp ++ + + d+++p ++vGG+P + + ++ + +F+GCir++ mKIAA4087 1213 SPNSAST---SADTNDP--VFVGGFP---GGLNQFGLTTNIRFRGCIRSL 1254 si...ngkpld<-* +++++ gkpl+ mKIAA4087 1255 KLtkgTGKPLE 1265 //